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SCNpilot_expt_1000_bf_scaffold_6017

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6017_1
Neochlamydia sp. TUME1, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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2..748
DNA (747bp) protein (249aa)
Leucine dehydrogenase {ECO:0000313|EMBL:KIC77124.1}; EC=1.4.1.9 {ECO:0000313|EMBL:KIC77124.1};; TaxID=1478174 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. TUME1.;"
gdhA; Glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.9); K00263 leucine dehydrogenase [EC:1.4.1.9]
Leucine dehydrogenase n=1 Tax=Waddlia chondrophila 2032/99 RepID=F8LF95_9CHLA
SCNpilot_expt_1000_bf_scaffold_6017_2
Neochlamydia sp. TUME1, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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765..1973
DNA (1209bp) protein (403aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1478174 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. TUME1.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] rbh
Arginine--tRNA ligase n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=SYR_PARUW rbh
SCNpilot_expt_1000_bf_scaffold_6017_3
Neochlamydia sp. EPS4, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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1993..2505
DNA (513bp) protein (171aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1478175 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. EPS4.;"
argS; Arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
Arginine--tRNA ligase n=2 Tax=Waddlia chondrophila RepID=D6YSK7_WADCW
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_1000_bf_scaffold_6017_2].
SCNpilot_expt_1000_bf_scaffold_6017_4
unknown

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comp(2607..3218)
DNA (612bp) protein (204aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6017_5
unknown

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comp(3341..3691)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6017_6
Neochlamydia sp. TUME1, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(3859..4209)
DNA (351bp) protein (117aa)
L-lysine 2,3-aminomutase {ECO:0000313|EMBL:KIC77134.1}; EC=5.4.3.- {ECO:0000313|EMBL:KIC77134.1};; TaxID=1478174 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. TUME1.;"
kamA; Lysine 2,3-aminomutase (EC:5.4.3.2)
Lysine 2,3-aminomutase n=2 Tax=Waddlia chondrophila RepID=D6YU86_WADCW
SCNpilot_expt_1000_bf_scaffold_6017_7
Neochlamydia sp. EPS4, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(4169..4849)
DNA (681bp) protein (227aa)
L-lysine 2,3-aminomutase {ECO:0000313|EMBL:KIC76361.1}; EC=5.4.3.- {ECO:0000313|EMBL:KIC76361.1};; TaxID=1478175 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. EPS4.;"
Simlar to L-lysine 2,3-aminomutase n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MEP5_PARUW
yodO; L-lysine 2,3-aminomutase
SCNpilot_expt_1000_bf_scaffold_6017_8
unknown

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5037..5381
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6017_9
R_OP11_Roizmanbacteria_35_13, Roizmannbacteria, Microgenomates, Bacteria

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comp(5533..6459)
DNA (927bp) protein (309aa)
Putative mannan endo-1,4-beta-mannosidase n=1 Tax=Rhodococcus ruber BKS 20-38 RepID=M3A063_9NOCA
Carbohydrate binding family 11
Tax=RIFCSPLOWO2_01_FULL_OP11_Roizmanbacteria_35_13_curated
SCNpilot_expt_1000_bf_scaffold_6017_10
Citrus clementina, Citrus, Sapindales, rosids, Streptophyta, Viridiplantae

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6714..7859
DNA (1146bp) protein (382aa)
UPI0003D78845 related cluster n=1 Tax=unknown RepID=UPI0003D78845
Uncharacterized protein {ECO:0000313|EMBL:ESR64906.1}; TaxID=85681 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Citrus.;" source="Citrus clementina.;"
Myblike DNA-binding domain containing protein
SCNpilot_expt_1000_bf_scaffold_6017_11
Neochlamydia sp. EPS4, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(7958..9400)
DNA (1443bp) protein (481aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1478175 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. EPS4.;"
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7); K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] rbh
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8N3_9CHLA rbh
Displaying 11 items

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