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SCNpilot_expt_1000_bf_scaffold_3881

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3881_1
unknown

Not on your lists

comp(3..122)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3881_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(321..1418)
DNA (1098bp) protein (366aa)
Permease YjgP/YjgQ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W2G4_9SPHN rbh
Permease YjgP/YjgQ {ECO:0000313|EMBL:ENY81692.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
permease YjgP/YjgQ; K11720 lipopolysaccharide export system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3881_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1421..2557)
DNA (1137bp) protein (379aa)
Permease YjgP/YjgQ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WE28_9SPHN rbh
Permease YjgP/YjgQ {ECO:0000313|EMBL:ENY81691.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
permease YjgP/YjgQ rbh
SCNpilot_expt_1000_bf_scaffold_3881_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2734..3207
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UTC5_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:ENY81690.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3881_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3555..4130
DNA (576bp) protein (192aa)
Diacylglycerol kinase catalytic subunit n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UTW1_9SPHN rbh
Diacylglycerol kinase catalytic subunit {ECO:0000313|EMBL:ENY81689.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
diacylglycerol kinase catalytic subunit rbh
SCNpilot_expt_1000_bf_scaffold_3881_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4139..4999
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WD99_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:ENY81688.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3881_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4996..6954)
DNA (1959bp) protein (653aa)
Periplasmic sensor hybrid histidine kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W2G0_9SPHN rbh
Periplasmic sensor hybrid histidine kinase {ECO:0000313|EMBL:ENY81687.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
periplasmic sensor hybrid histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_3881_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7068..8321)
DNA (1254bp) protein (418aa)
glycine C-acetyltransferase; K00639 glycine C-acetyltransferase [EC:2.3.1.29] rbh
Glycine C-acetyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WE17_9SPHN rbh
Glycine C-acetyltransferase {ECO:0000313|EMBL:ENY81686.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_1000_bf_scaffold_3881_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8326..8574)
DNA (249bp) protein (83aa)
Acyl carrier protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJB2_9SPHN
acyl carrier protein
Acyl carrier protein {ECO:0000313|EMBL:BAK64782.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3881_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8690..9610)
DNA (921bp) protein (307aa)
Putative epimerase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJB0_9SPHN rbh
putative epimerase rbh
Putative epimerase {ECO:0000313|EMBL:BAK64780.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3881_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9621..10751)
DNA (1131bp) protein (377aa)
proB; glutamate 5-kinase; K00931 glutamate 5-kinase [EC:2.7.2.11] rbh
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glutamate 5-kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA9_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_3881_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10872..11930)
DNA (1059bp) protein (353aa)
GTPase Obg n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIU8_9SPHN rbh
putative GTP-binding protein; K03979 GTP-binding protein rbh
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3881_13
unknown

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comp(12032..12325)
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3881_14
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12493..13032
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI000374F7E9
Magnesium transporter {ECO:0000313|EMBL:KDP74151.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
corA; magnesium and cobalt transport protein CorA; K03284 magnesium transporter
SCNpilot_expt_1000_bf_scaffold_3881_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13046..13837)
DNA (792bp) protein (264aa)
Phenazine biosynthesis protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK84_9SPHN
phenazine biosynthesis protein; K06998
Phenazine biosynthesis protein {ECO:0000313|EMBL:BAK64947.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3881_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13872..14486)
DNA (615bp) protein (205aa)
pdxH; pyridoxine/pyridoxamine 5'-phosphate oxidase; K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK82_9SPHN
SCNpilot_expt_1000_bf_scaffold_3881_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14592..15287
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK81_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64944.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3881_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15828..16334
DNA (507bp) protein (169aa)
DnaJ-class molecular chaperone n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK80_9SPHN
DnaJ-class molecular chaperone
DnaJ-class molecular chaperone {ECO:0000313|EMBL:BAK64943.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3881_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16402..16794)
DNA (393bp) protein (131aa)
hypothetical protein; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIT1_9SPHN
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64761.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3881_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17025..17459
DNA (435bp) protein (145aa)
Putative acetyltransferase {ECO:0000313|EMBL:BAK64762.1}; EC=2.3.1.- {ECO:0000313|EMBL:BAK64762.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative acetyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIT2_9SPHN
putative acetyltransferase
Displaying 20 items

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