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SCNpilot_expt_1000_bf_scaffold_5692

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5692_1
unknown

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2..67
DNA (66bp) protein (22aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5692_2
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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178..1386
DNA (1209bp) protein (403aa)
integrase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024893DD rbh
Integrase {ECO:0000313|EMBL:KGB59218.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
phage integrase family protein rbh
SCNpilot_expt_1000_bf_scaffold_5692_3
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1396..2259
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJZ8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA11268.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCNpilot_expt_1000_bf_scaffold_5692_4
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2432..2605
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IXS1_9SPHN
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:KGB59216.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
SCNpilot_expt_1000_bf_scaffold_5692_5
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2667..3194
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Gluconacetobacter europaeus RepID=UPI0002F5C809
Uncharacterized protein {ECO:0000313|EMBL:KGB59215.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5692_6
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3402..3770
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ74_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:KGB59214.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5692_7
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3767..5659
DNA (1893bp) protein (631aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CP67_SPHYA rbh
Type IV secretory pathway VirD4 components-like protein {ECO:0000313|EMBL:KGB59213.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
Type IV secretory pathway VirD4 components-like protein
SCNpilot_expt_1000_bf_scaffold_5692_8
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5659..8469
DNA (2811bp) protein (937aa)
TrwC protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ76_SPHAL rbh
TrwC protein {ECO:0000313|EMBL:KGB59212.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
TrwC protein rbh
SCNpilot_expt_1000_bf_scaffold_5692_9
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8511..9431
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J3U9_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KGB59211.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5692_10
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9639..10130
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HWZ1_9SPHN
Nucleotidyltransferase {ECO:0000313|EMBL:KGB59210.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5692_11
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10127..10642
DNA (516bp) protein (172aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CP58_SPHYA
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKU74089.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_5692_12
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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comp(10762..10995)
DNA (234bp) protein (78aa)
SpoVT/AbrB domain protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C066_NITHN
SpoVT/AbrB domain-containing protein
Tax=RBG_16_Acidobacteria_68_9_curated
SCNpilot_expt_1000_bf_scaffold_5692_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11219..12781)
DNA (1563bp) protein (521aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SBT8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE54286.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_5692_14
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12778..13431)
DNA (654bp) protein (218aa)
TonB-dependent receptor n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V9G7_SPHWW
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABQ68933.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Displaying 14 items

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