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SCNpilot_expt_1000_bf_scaffold_12977

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_12977_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..655)
DNA (654bp) protein (218aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGE2_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_12977_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(652..1419)
DNA (768bp) protein (256aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphapr
putative DNA-binding/iron metalloprotein/AP endonuclease; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4Q7_9SPHN
SCNpilot_expt_1000_bf_scaffold_12977_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1431..1682)
DNA (252bp) protein (84aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphapr
putative DNA-binding/iron metalloprotein/AP endonuclease; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4Q7_9SPHN
SCNpilot_expt_1000_bf_scaffold_12977_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1798..2751
DNA (954bp) protein (318aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hemC; porphobilinogen deaminase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61] rbh
Porphobilinogen deaminase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFL5_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_12977_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2748..3074
DNA (327bp) protein (109aa)
Uroporphyrinogen-III synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UW73_9SPHN
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:ENY82524.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
uroporphyrinogen-III synthase
SCNpilot_expt_1000_bf_scaffold_12977_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3071..3451
DNA (381bp) protein (127aa)
Uroporphyrinogen-III synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UW73_9SPHN
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:ENY82524.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
uroporphyrinogen-III synthase
SCNpilot_expt_1000_bf_scaffold_12977_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3453..4364
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVN5_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:ENY82525.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_12977_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5216..5620
DNA (405bp) protein (135aa)
acyl-CoA dehydrogenase-like protein; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7]
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGE6_9SPHN
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ENY82526.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_1000_bf_scaffold_12977_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5640..6758
DNA (1119bp) protein (373aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4R1_9SPHN rbh
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ENY82527.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
L-carnitine dehydratase/bile acid-inducible protein F rbh
SCNpilot_expt_1000_bf_scaffold_12977_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6846..8123)
DNA (1278bp) protein (426aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFM1_9SPHN rbh
TonB-dependent receptor {ECO:0000313|EMBL:ENY82528.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
Displaying 10 items

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