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SCNpilot_expt_1000_bf_scaffold_16498

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_16498_1
unknown

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comp(3..107)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_16498_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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205..666
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00037604C0
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
glycine cleavage system H protein
SCNpilot_expt_1000_bf_scaffold_16498_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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740..1021
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK53_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK89593.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCNpilot_expt_1000_bf_scaffold_16498_4
unknown

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comp(1069..1320)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_16498_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1333..2637
DNA (1305bp) protein (435aa)
glnA; glutamate-ammonia ligase GlnA (EC:6.3.1.2)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Glutamine synthetase n=2 Tax=Variovorax paradoxus RepID=C5CTT3_VARPS
SCNpilot_expt_1000_bf_scaffold_16498_6
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2650..3486
DNA (837bp) protein (279aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
dapF; diaminopimelate epimerase DapF (EC:5.1.1.7) rbh
Diaminopimelate epimerase n=1 Tax=Clostridium sp. CAG:505 RepID=R7ALX9_9CLOT rbh
SCNpilot_expt_1000_bf_scaffold_16498_7
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3488..3709
DNA (222bp) protein (74aa)
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
LL-diaminopimelate aminotransferase n=1 Tax=Clostridium sp. CAG:81 RepID=R5G8B0_9CLOT
Displaying 7 items

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