ggKbase | organisms

Consensus taxonomy: Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 4.40 Longest contig: 9.80 Kbp Bin length: 949.39 Kbp GC content: 68.02 %

Contigs count: 421 Features count: 1264 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 BSCG 6 / 51 ASCG 4 / 38

Displaying items 301-350 of 421 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_31979 Species: Polaromonas sp. CF318 (50%)	2	1412 bp	70.25	6.20	91.57
SCNpilot_expt_1000_bf_scaffold_36246 Species: Alicycliphilus denitrificans (50%)	2	1275 bp	71.69	4.71	83.76
SCNpilot_expt_1000_bf_scaffold_27911 Species: Acidovorax citrulli (50%)	2	2132 bp	65.76	7.39	74.02
SCNpilot_expt_1000_bf_scaffold_19223 Species: GWA2_Curvibacter_64_110_curated (50%)	2	2777 bp	66.08	4.59	76.92
SCNpilot_expt_1000_bf_scaffold_37457 Species: RLO_Rhodoferax_60_11 (50%)	2	1239 bp	65.94	3.43	66.83
SCNpilot_expt_1000_bf_scaffold_45233 Species: R_Burkholderiales_67_14 (50%)	2	1012 bp	72.63	2.22	100.20
SCNpilot_expt_1000_bf_scaffold_42108 Species: Ramlibacter tataouinensis (50%)	2	1106 bp	70.07	2.94	96.84
SCNpilot_expt_1000_bf_scaffold_29334 Species: BJP_08E140C01_10KDA_Burkholderiales_65_51 (50%)	2	1520 bp	71.18	4.77	101.25
SCNpilot_expt_1000_bf_scaffold_53705 Species: Acidovorax sp. JS42 (100%)	2	1240 bp	68.39	3.63	60.48
SCNpilot_expt_1000_bf_scaffold_34465 Species: Acidovorax sp. JS42 (50%)	2	1328 bp	67.09	4.71	91.49
SCNpilot_expt_1000_bf_scaffold_27167 Species: R_Burkholderiales_67_14 (50%)	2	2116 bp	66.97	3.31	49.20
SCNpilot_expt_1000_bf_scaffold_35007 Species: Leptothrix cholodnii (50%)	2	1310 bp	66.11	3.82	84.73
SCNpilot_expt_1000_bf_scaffold_55225 Species: GWA2_Curvibacter_64_110_curated (50%)	2	1397 bp	62.06	3.76	58.84
SCNpilot_expt_1000_bf_scaffold_66230 Species: Pseudomonas alcaligenes (50%)	2	1162 bp	52.32	4.73	76.68
SCNpilot_expt_1000_bf_scaffold_16706 Species: Hylemonella gracilis (50%)	2	2439 bp	65.31	5.23	90.41
SCNpilot_expt_1000_bf_scaffold_40322 Species: Polaromonas sp. CF318 (50%)	2	1159 bp	61.35	3.88	98.36
SCNpilot_expt_1000_bf_scaffold_28547 Species: Comamonas testosteroni (50%)	2	1555 bp	60.84	4.34	69.07
SCNpilot_expt_1000_bf_scaffold_24339 Species: Acidovorax sp. KKS102 (50%)	2	1774 bp	70.97	4.79	94.02
SCNpilot_expt_1000_bf_scaffold_42899 Species: Ralstonia sp. A12 (50%)	2	1083 bp	71.28	3.46	79.78
SCNpilot_expt_1000_bf_scaffold_23823 Species: Polaromonas naphthalenivorans (50%)	2	1806 bp	72.26	5.12	92.19
SCNpilot_expt_1000_bf_scaffold_41951 Species: GWA2_Curvibacter_64_110_curated (50%)	2	1112 bp	70.05	5.62	90.92
SCNpilot_expt_1000_bf_scaffold_33416 Species: BJP_08E140C01_10KDA_Burkholderiales_65_51 (50%)	2	1361 bp	64.22	4.04	61.50
SCNpilot_expt_1000_bf_scaffold_33163 Species: BJP_08E140C01_10KDA_Burkholderiales_65_51 (50%)	2	1369 bp	69.83	2.92	92.04
SCNpilot_expt_1000_bf_scaffold_33931 Species: Stenotrophomonas sp. SKA14 (100%)	2	1345 bp	63.64	3.53	89.89
SCNpilot_expt_1000_bf_scaffold_19781 Species: Variovorax sp. CF313 (50%)	2	2117 bp	69.49	4.61	95.51
SCNpilot_expt_1000_bf_scaffold_38849 Species: Candidatus Accumulibacter sp. SK-02 (50%)	2	1201 bp	68.61	4.37	94.92
SCNpilot_expt_1000_bf_scaffold_20346 Species: Acidovorax delafieldii (50%)	2	2068 bp	67.21	4.96	93.57
SCNpilot_expt_1000_bf_scaffold_28571 Species: RLO_Rhodoferax_60_11 (50%)	2	1554 bp	65.19	2.57	98.84
SCNpilot_expt_1000_bf_scaffold_31524 Species: Alicycliphilus denitrificans (100%)	2	1430 bp	70.49	4.55	98.81
SCNpilot_expt_1000_bf_scaffold_40349 Species: R_Burkholderiales_67_14 (50%)	2	1625 bp	74.83	4.46	70.52
SCNpilot_expt_1000_bf_scaffold_31271 Species: Cupriavidus pinatubonensis (50%)	2	1440 bp	56.60	2.08	97.71
SCNpilot_expt_1000_bf_scaffold_26632 Species: RLO_Burkholderiales_61_40 (50%)	2	3012 bp	67.07	4.65	80.68
SCNpilot_expt_1000_bf_scaffold_16225 Species: Delftia acidovorans (50%)	2	3035 bp	72.13	5.52	98.55
SCNpilot_expt_1000_bf_scaffold_36305 Species: Achromobacter xylosoxidans (50%)	2	1825 bp	66.08	4.79	98.96
SCNpilot_expt_1000_bf_scaffold_65336 Species: Acidovorax citrulli (50%)	2	1236 bp	59.39	4.45	71.36
SCNpilot_expt_1000_bf_scaffold_45546 Species: Methylococcus capsulatus (50%)	2	1692 bp	68.50	3.25	79.61
SCNpilot_expt_1000_bf_scaffold_40876 Species: Ramlibacter tataouinensis (100%)	2	1144 bp	71.59	3.93	85.49
SCNpilot_expt_1000_bf_scaffold_33957 Species: Acidovorax sp. CF316 (50%)	2	1344 bp	73.59	4.65	100.22
SCNpilot_expt_1000_bf_scaffold_24638 Species: Aquabacterium sp. NJ1 (50%)	2	1757 bp	67.22	3.98	64.20
SCNpilot_expt_1000_bf_scaffold_40624 Species: Ramlibacter tataouinensis (100%)	2	1151 bp	70.20	3.26	98.78
SCNpilot_expt_1000_bf_scaffold_36321 Species: Variovorax paradoxus (50%)	2	2488 bp	67.20	3.92	82.11
SCNpilot_expt_1000_bf_scaffold_38363 Species: Acidovorax temperans (50%)	2	1795 bp	66.07	3.76	74.87
SCNpilot_expt_1000_bf_scaffold_36323 Species: Burkholderiaceae bacterium 16 (50%)	2	1273 bp	69.44	3.93	98.27
SCNpilot_expt_1000_bf_scaffold_33196 Species: Acidovorax sp. CF316 (100%)	2	1368 bp	70.32	3.47	90.35
SCNpilot_expt_1000_bf_scaffold_24902 Species: RLO_Burkholderiales_64_33 (50%)	2	2229 bp	68.78	4.15	86.27
SCNpilot_expt_1000_bf_scaffold_34015 Species: Acidovorax sp. CF316 (50%)	2	1342 bp	73.62	4.28	88.52
SCNpilot_expt_1000_bf_scaffold_48268 Species: Curvibacter putative symbiont of Hydra magnipapillata (50%)	2	2124 bp	70.81	4.12	56.50
SCNpilot_expt_1000_bf_scaffold_28088 Species: BJP_08E140C01_Burkholderiales_65_30 (50%)	2	1576 bp	72.53	2.70	92.13
SCNpilot_expt_1000_bf_scaffold_23105 Species: uncultured bacterium (100%)	2	2347 bp	64.47	4.37	63.91
SCNpilot_expt_1000_bf_scaffold_30466 Species: Alicycliphilus denitrificans (50%)	2	1471 bp	67.85	4.25	91.57

Displaying items 301-350 of 421 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_BF_INOC_Burkholderiales_67_9) and add all its contigs / scaffolds to the organism you choose below

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SCNpilot_BF_INOC_Burkholderiales_67_9

SCNPILOT_EXPT_1000_BF_Burkholderiales_68_4

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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