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SCNpilot_expt_1000_bf_scaffold_23904

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Displaying 3 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_23904_1
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..829
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003748CA7
Uncharacterized protein {ECO:0000313|EMBL:CCW18895.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
cupin
SCNpilot_expt_1000_bf_scaffold_23904_2
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(868..1431)
DNA (564bp) protein (188aa)
rluE; ribosomal large subunit pseudouridine synthase E; K06181 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
ribosomal large subunit pseudouridine synthase E n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B61B22 rbh
Pseudouridine synthase {ECO:0000313|EMBL:KHL25833.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
SCNpilot_expt_1000_bf_scaffold_23904_3
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1499..1801)
DNA (303bp) protein (101aa)
RNA polymerase sigma factor RpoD n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD102A
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Displaying 3 items

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