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SCNpilot_expt_1000_bf_scaffold_791

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Displaying items 1-30 of 282 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_791_1
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..193)
DNA (192bp) protein (64aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Microbacterium barkeri RepID=UPI0002E681C1
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EQM74578.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
fadB; 3-hydroxyacyl-CoA dehydrogenase
SCNpilot_expt_1000_bf_scaffold_791_2
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(190..1395)
DNA (1206bp) protein (402aa)
3-ketoacyl-CoA thiolase {ECO:0000313|EMBL:KJL19618.1}; EC=2.3.1.16 {ECO:0000313|EMBL:KJL19618.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
atoB; acetyl-CoA acetyltransferase; K00632 acetyl-CoA acyltransferase [EC:2.3.1.16]
Acetyl-CoA acetyltransferase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KDL1_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_791_3
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1469..2044)
DNA (576bp) protein (192aa)
ribonuclease D; K03684 ribonuclease D [EC:3.1.13.5]
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K3Z4_9MICO
Contig_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIP91964.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
SCNpilot_expt_1000_bf_scaffold_791_4
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2059..2661)
DNA (603bp) protein (201aa)
ribonuclease D; K03684 ribonuclease D [EC:3.1.13.5]
ribonuclease D n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000346C1BF
Ribonuclease D {ECO:0000313|EMBL:EYT59131.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
SCNpilot_expt_1000_bf_scaffold_791_5
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2654..3235)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F99C7E rbh
Uncharacterized protein {ECO:0000313|EMBL:KJL27850.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_791_6
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3261..4433
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KGI5_9MICO rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:KDA05608.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hydrolase of the alpha/beta superfamily
SCNpilot_expt_1000_bf_scaffold_791_7
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4440..4757)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KIL5_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM74573.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
SufE protein probably; K02426 cysteine desulfuration protein SufE
SCNpilot_expt_1000_bf_scaffold_791_8
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6132..6941
DNA (810bp) protein (270aa)
ATPase n=1 Tax=Microbacterium barkeri RepID=UPI00030790D4
AFG1-like ATPase {ECO:0000313|EMBL:KJL17599.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
ATPase; K06916
SCNpilot_expt_1000_bf_scaffold_791_9
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6963..7559)
DNA (597bp) protein (199aa)
YceI family protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BUY0_BEUC1
Polyisoprenoid-binding protein {ECO:0000313|EMBL:EWT02604.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_791_10
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7774..9009
DNA (1236bp) protein (412aa)
Ammonia channel protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KEG5_9MICO rbh
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
ammonia permease; K03320 ammonium transporter, Amt family
SCNpilot_expt_1000_bf_scaffold_791_11
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9030..9635
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E4A07A
Uncharacterized protein {ECO:0000313|EMBL:EQM74569.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
PemK domain-containing protein
SCNpilot_expt_1000_bf_scaffold_791_12
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9733..10119
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F94685
SPW repeat protein {ECO:0000313|EMBL:KJL17603.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_791_13
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10222..11118)
DNA (897bp) protein (299aa)
nucleoside-diphosphate sugar epimerase n=1 Tax=Leucobacter chromiiresistens RepID=UPI000262AF47
Nucleoside-diphosphate sugar epimerase {ECO:0000313|EMBL:EYT53660.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
nucleoside-diphosphate sugar epimerase; K07071
SCNpilot_expt_1000_bf_scaffold_791_14
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12051..14063
DNA (2013bp) protein (671aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K3X7_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_791_15
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14060..14614
DNA (555bp) protein (185aa)
AP-4-A phosphorylase {ECO:0000313|EMBL:KJL19596.1}; EC=2.7.7.53 {ECO:0000313|EMBL:KJL19596.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
HIT family hydrolase n=1 Tax=Microbacterium barkeri RepID=UPI0002F945F8 rbh
diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase
SCNpilot_expt_1000_bf_scaffold_791_16
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14665..15516)
DNA (852bp) protein (284aa)
Pyridoxamine kinase {ECO:0000256|HAMAP-Rule:MF_01639, ECO:0000256|SAAS:SAAS00011110}; Short=PM kinase {ECO:0000256|HAMAP-Rule:MF_01639};; EC=2.7.1.35 {ECO:0000256|HAMAP-Rule:MF_01639, ECO:0000256|SAAS:SAAS00088591};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
pdxY; pyridoxamine kinase (EC:2.7.1.35); K00868 pyridoxine kinase [EC:2.7.1.35] rbh
pyridoxamine kinase n=1 Tax=Microbacterium barkeri RepID=UPI00030EA002 rbh
SCNpilot_expt_1000_bf_scaffold_791_17
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(15548..16849)
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E1F253 rbh
GntR family transcriptional regulator rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_791_18
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16932..17828
DNA (897bp) protein (299aa)
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
pyridoxine biosynthesis protein; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-]
Pyridoxal biosynthesis lyase PdxS n=2 Tax=Microbacterium RepID=H8E3B3_9MICO
SCNpilot_expt_1000_bf_scaffold_791_19
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17825..18418
DNA (594bp) protein (198aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
glutamine amidotransferase; K08681 glutamine amidotransferase [EC:2.6.-.-]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003653D40
SCNpilot_expt_1000_bf_scaffold_791_20
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18445..19320
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K847_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJL27886.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_791_21
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19398..20159
DNA (762bp) protein (254aa)
transcriptional regulator n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003706008
Probable transcriptional regulatory protein RU09_11125 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_791_22
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20224..20823
DNA (600bp) protein (200aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
holliday junction resolvasome, endonuclease subunit; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KDI1_9MICO
SCNpilot_expt_1000_bf_scaffold_791_23
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20833..21441
DNA (609bp) protein (203aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
holliday junction resolvasome, DNA-binding subunit; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034BF40E
SCNpilot_expt_1000_bf_scaffold_791_24
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21434..22465
DNA (1032bp) protein (344aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
ruvB; holliday junction resolvasome, helicase subunit; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction DNA helicase RuvB n=1 Tax=Microbacterium barkeri RepID=UPI0002F1800D rbh
SCNpilot_expt_1000_bf_scaffold_791_25
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22546..22971
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000348E853
Preprotein translocase subunit YajC {ECO:0000313|EMBL:KJL19584.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
SCNpilot_expt_1000_bf_scaffold_791_26
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23007..24764
DNA (1758bp) protein (586aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000344A221
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD
SCNpilot_expt_1000_bf_scaffold_791_27
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24761..25756
DNA (996bp) protein (332aa)
Protein-export membrane protein SecF n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KDH8_9MICO rbh
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF
SCNpilot_expt_1000_bf_scaffold_791_28
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25829..28081
DNA (2253bp) protein (751aa)
relA; guanosine polyphosphate pyrophosphohydrolase/synthetase; K00951 GTP pyrophosphokinase [EC:2.7.6.5]
(p)ppGpp synthetase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000348AA59 rbh
Contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIP90891.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
SCNpilot_expt_1000_bf_scaffold_791_29
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28068..28625)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000366E8B4
Uncharacterized protein {ECO:0000313|EMBL:KJL27896.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
SAM-dependent methyltransferase
SCNpilot_expt_1000_bf_scaffold_791_30
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28692..30038)
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00030E1B97 rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM74539.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
hypothetical protein
Displaying items 1-30 of 282 in total

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