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SCNpilot_expt_1000_bf_scaffold_833

Search features with annotation key words

Displaying items 1-30 of 101 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_833_1
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2..397)
DNA (396bp) protein (132aa)
30S ribosomal protein S1 n=1 Tax=Microbacterium barkeri RepID=UPI0002F0FA3C
30S ribosomal protein S1 {ECO:0000313|EMBL:EQM72971.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
SCNpilot_expt_1000_bf_scaffold_833_2
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

607..1509
DNA (903bp) protein (301aa)
5'-3' exonuclease {ECO:0000313|EMBL:KJQ54919.1}; EC=3.1.11.- {ECO:0000313|EMBL:KJQ54919.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KFL2_9MICO rbh
5'-3' exonuclease
SCNpilot_expt_1000_bf_scaffold_833_3
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1538..2524)
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00037D32F1 rbh
DNA polymerase/3'-5' exonuclease PolX {ECO:0000313|EMBL:KJL27588.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
histidinol phosphatase; K04477 putative hydrolase
SCNpilot_expt_1000_bf_scaffold_833_4
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2539..3615)
DNA (1077bp) protein (359aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
trpD; anthranilate phosphoribosyltransferase; K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18]
anthranilate phosphoribosyltransferase n=1 Tax=Microbacterium barkeri RepID=UPI0002FE538F rbh
SCNpilot_expt_1000_bf_scaffold_833_5
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3751..4449
DNA (699bp) protein (233aa)
Cytochrome c oxidase subunit 3 {ECO:0000313|EMBL:KJL22676.1}; EC=1.9.3.1 {ECO:0000313|EMBL:KJL22676.1};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
ctaE; heme/copper-type cytochrome/quinol oxidase, subunit 3; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C9BFD rbh
SCNpilot_expt_1000_bf_scaffold_833_6
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4469..5302
DNA (834bp) protein (278aa)
cystathionine beta-lyase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034A4469 rbh
Contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIP93307.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
qcrC; cytochrome c; K03889 ubiquinol-cytochrome c reductase cytochrome c subunit
SCNpilot_expt_1000_bf_scaffold_833_7
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

5339..6415
DNA (1077bp) protein (359aa)
ubiquinol-cytochrome C reductase n=1 Tax=Microbacterium barkeri RepID=UPI0002F83EFC rbh
qcrA; rieske Fe-S protein; K03890 ubiquinol-cytochrome c reductase iron-sulfur subunit
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_833_8
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6412..8265
DNA (1854bp) protein (618aa)
Menaquinol-cytochrome C reductase cytochrome b subunit n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KDN4_9MICO rbh
Menaquinol-cytochrome C reductase cytochrome b subunit {ECO:0000313|EMBL:EQM72981.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
qcrB; cytochrome b subunit of the bc complex; K03891 ubiquinol-cytochrome c reductase cytochrome b subunit
SCNpilot_expt_1000_bf_scaffold_833_9
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8345..8857
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K1A3_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM72983.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
Putative acetyltransferase
SCNpilot_expt_1000_bf_scaffold_833_10
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8894..9310
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D33DB4
Contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIP93312.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
rhodanese-related sulfurtransferase
SCNpilot_expt_1000_bf_scaffold_833_11
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(9380..9802)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KFM2_9MICO
hypothetical protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_833_12
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9806..11530)
DNA (1725bp) protein (575aa)
Cytochrome c oxidase subunit 1 {ECO:0000313|EMBL:KJL17462.1}; EC=1.9.3.1 {ECO:0000313|EMBL:KJL17462.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
heme/copper-type cytochrome/quinol oxidase, subunit 1; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
cytochrome C oxidase subunit I n=1 Tax=Microbacterium sp. 292MF RepID=UPI00038216A3
SCNpilot_expt_1000_bf_scaffold_833_13
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11534..12325)
DNA (792bp) protein (264aa)
heme/copper-type cytochrome/quinol oxidase, subunit 2; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KBN8_9MICO rbh
Contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIP93315.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
SCNpilot_expt_1000_bf_scaffold_833_14
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12527..12889)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E06217
Iron-sulfur cluster insertion protein ErpA {ECO:0000313|EMBL:KJL32634.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_833_15
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12988..14403)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KAX1_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:KDA06312.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase
SCNpilot_expt_1000_bf_scaffold_833_16
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14448..15011
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KFM7_9MICO
Membrane protein {ECO:0000313|EMBL:KDA06313.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_833_17
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15044..16063)
DNA (1020bp) protein (340aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
pyrD; dihydroorotate dehydrogenase; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002EBC9DA rbh
SCNpilot_expt_1000_bf_scaffold_833_18
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16074..16550)
DNA (477bp) protein (159aa)
NrdR family transcriptional regulator n=1 Tax=Microbacterium barkeri RepID=UPI000304B430
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
nrdR; transcriptional regulator; K07738 transcriptional repressor NrdR
SCNpilot_expt_1000_bf_scaffold_833_19
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16562..17890)
DNA (1329bp) protein (443aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hisD; histidinol dehydrogenase; K00013 histidinol dehydrogenase [EC:1.1.1.23]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003462C67 rbh
SCNpilot_expt_1000_bf_scaffold_833_20
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17895..19262)
DNA (1368bp) protein (456aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F7EF66 rbh
Contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIP93400.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_833_21
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(19362..21500)
DNA (2139bp) protein (713aa)
dnaE; DNA polymerase III, alpha subunit; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III subunit alpha n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034922A7
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_833_22
unknown

Not on your lists

22276..22422
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_833_23
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22923..23405
DNA (483bp) protein (161aa)
NUDIX hydrolase n=1 Tax=Microbacterium sp. TS-1 RepID=U2XK80_9MICO
RNA pyrophosphohydrolase {ECO:0000313|EMBL:KJL32627.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_833_24
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(23395..23622)
DNA (228bp) protein (76aa)
N-acetyltransferase GCN5 n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KFN8_9MICO
N-acetyltransferase GCN5
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_833_25
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23629..23970)
DNA (342bp) protein (114aa)
N-acetyltransferase GCN5 n=1 Tax=Microbacterium barkeri RepID=UPI0002DA1B06
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EQM73000.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
GCN5-related N-acetyltransferase
SCNpilot_expt_1000_bf_scaffold_833_26
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24008..24751)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Brevibacterium casei S18 RepID=K9AX39_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJL17476.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
SCNpilot_expt_1000_bf_scaffold_833_27
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24748..25218)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI000378B360
Uncharacterized protein {ECO:0000313|EMBL:KJL17477.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_833_28
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25209..25826)
DNA (618bp) protein (206aa)
cholesterol esterase n=1 Tax=Leifsonia sp. 109 RepID=UPI00036E5FBF
Uncharacterized protein {ECO:0000313|EMBL:KJL17478.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_833_29
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25920..26519
DNA (600bp) protein (200aa)
Transcriptional regulator, TetR family n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T2F8_LEIAQ
HTH-type transcriptional regulator BetI {ECO:0000313|EMBL:KJL32620.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_833_30
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26526..27446)
DNA (921bp) protein (307aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rlu; pseudouridylate synthase, 23S RNA-specific; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
RNA pseudouridine synthase n=1 Tax=Microbacterium barkeri RepID=UPI0002F1F526 rbh
Displaying items 1-30 of 101 in total

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