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SCNpilot_expt_1000_bf_scaffold_862

Search features with annotation key words

Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_862_1
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1..84
DNA (84bp) protein (28aa)
Integrase, catalytic region n=1 Tax=Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1) RepID=D7GGE6_PROFC
integrase
Uncharacterized protein {ECO:0000313|EMBL:KDA04517.1}; Flags: Fragment;; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
SCNpilot_expt_1000_bf_scaffold_862_2
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

200..1546
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00035ED651 rbh
Acetoin dehydrogenase operon transcriptional activator AcoR {ECO:0000313|EMBL:KJL24663.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
transcriptional activator of acetoin/glycerol metabolism
SCNpilot_expt_1000_bf_scaffold_862_3
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1653..3200
DNA (1548bp) protein (516aa)
EPTC-inducible aldehyde dehydrogenase {ECO:0000313|EMBL:KJL29950.1}; EC=1.2.1.3 {ECO:0000313|EMBL:KJL29950.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
NAD-dependent aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
aldehyde dehydrogenase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349BB2B rbh
SCNpilot_expt_1000_bf_scaffold_862_4
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3267..3668
DNA (402bp) protein (134aa)
UDP-glucose 4-epimerase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003466997
Uncharacterized protein {ECO:0000313|EMBL:KJL29949.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein; K09959 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_5
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3679..4905)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K1M7_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:KJL34195.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_6
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4902..5870)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KB95_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM73129.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_7
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5977..6183
DNA (207bp) protein (69aa)
Uncharacterized protein {ECO:0000313|EMBL:KJL34174.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
SCNpilot_expt_1000_bf_scaffold_862_8
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6180..6620
DNA (441bp) protein (147aa)
Ribonuclease VapC21 {ECO:0000313|EMBL:KJL34175.1}; EC=3.1.-.- {ECO:0000313|EMBL:KJL34175.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
Ribonuclease VapC n=1 Tax=Mycobacterium vaccae ATCC 25954 RepID=K0VFD1_MYCVA
SCNpilot_expt_1000_bf_scaffold_862_9
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6736..7698
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000344BD72 rbh
Contig_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIP92958.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
transferase
SCNpilot_expt_1000_bf_scaffold_862_10
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7695..9038
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K2A1_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:KDA05114.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_11
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9118..10359
DNA (1242bp) protein (414aa)
N-acylneuraminate cytidylyltransferase {ECO:0000313|EMBL:KJL22399.1}; EC=2.7.7.43 {ECO:0000313|EMBL:KJL22399.1};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
acylneuraminate cytidylyltransferase; K00983 N-acylneuraminate cytidylyltransferase [EC:2.7.7.43] rbh
transferase n=1 Tax=Humibacter albus RepID=UPI0003B405AD rbh
SCNpilot_expt_1000_bf_scaffold_862_12
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10603..11475
DNA (873bp) protein (291aa)
N,N'-diacetyllegionaminic acid synthase {ECO:0000313|EMBL:KJQ54017.1}; EC=2.5.1.101 {ECO:0000313|EMBL:KJQ54017.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
N-acetylneuraminate synthase; K01654 N-acetylneuraminate synthase [EC:2.5.1.56] rbh
N-acetylneuraminate synthase n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003619242 rbh
SCNpilot_expt_1000_bf_scaffold_862_13
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11472..12797
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000378D294 rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP27715.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_14
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


13273..13641
DNA (369bp) protein (123aa)
30S ribosomal protein S6 n=1 Tax=Microbacterium barkeri RepID=UPI0002D77BE2
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rpsF; ribosomal protein S6; K02990 small subunit ribosomal protein S6
SCNpilot_expt_1000_bf_scaffold_862_15
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13647..14153
DNA (507bp) protein (169aa)
Single-stranded DNA-binding protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KBQ9_9MICO rbh
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_862_16
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


14215..14469
DNA (255bp) protein (85aa)
30S ribosomal protein S18 n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K1N9_9MICO
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
rpsR; ribosomal protein S18; K02963 small subunit ribosomal protein S18
SCNpilot_expt_1000_bf_scaffold_862_17
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


14481..14933
DNA (453bp) protein (151aa)
50S ribosomal protein L9 n=1 Tax=Microbacterium barkeri RepID=UPI0002DBC6FC
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rplI; ribosomal protein L9; K02939 large subunit ribosomal protein L9
SCNpilot_expt_1000_bf_scaffold_862_18
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14996..15508)
DNA (513bp) protein (171aa)
Putative transcriptional regulator id=7720310 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
LacI family transcriptional regulator {ECO:0000313|EMBL:EYT54549.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_862_19
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16143..17288)
DNA (1146bp) protein (382aa)
Translation initiation factor IF-2 n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LZ90_HALO1
translation initiation factor IF-2; K02519 translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
SCNpilot_expt_1000_bf_scaffold_862_20
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17685..19181
DNA (1497bp) protein (499aa)
Replicative DNA helicase {ECO:0000313|EMBL:KJQ52638.1}; EC=3.6.4.12 {ECO:0000313|EMBL:KJQ52638.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
dnaB; replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12]
DNA helicase n=1 Tax=Microbacterium barkeri RepID=UPI00037F6BCB rbh
SCNpilot_expt_1000_bf_scaffold_862_21
Gordonia hirsuta, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19277..19900
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00030E03E3
Uncharacterized protein {ECO:0000313|EMBL:GAC57579.1}; TaxID=1121927 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia hirsuta DSM 44140 = NBRC 16056.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_22
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19911..20435
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00036A903B
Uncharacterized protein {ECO:0000313|EMBL:KJL25869.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
SCNpilot_expt_1000_bf_scaffold_862_23
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20473..21246)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003828197 rbh
Hydrolase {ECO:0000313|EMBL:KHK99607.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_862_24
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21337..21987)
DNA (651bp) protein (217aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000313|EMBL:KJL31382.1}; EC=5.4.2.11 {ECO:0000313|EMBL:KJL31382.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Phosphoglycerate mutase family protein n=1 Tax=Kineosphaera limosa NBRC 100340 RepID=K6WVD2_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_862_25
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22022..22933)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003483895
Molecular chaperone DnaJ {ECO:0000313|EMBL:KDA05094.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
molecular chaperone DnaJ
SCNpilot_expt_1000_bf_scaffold_862_26
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23094..23240
DNA (147bp) protein (49aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000310DE5A
Uncharacterized protein {ECO:0000313|EMBL:KJL35164.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
bifunctional deaminase-reductase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_862_27
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23282..23461
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Brevibacterium casei S18 RepID=K9AFI7_9MICO
Contig_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIP88967.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
flagellar biosynthesis pathway, component FlhA
SCNpilot_expt_1000_bf_scaffold_862_28
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23474..24274)
DNA (801bp) protein (267aa)
Non-heme bromoperoxidase BPO-A2 {ECO:0000313|EMBL:KJL17313.1}; EC=1.11.1.- {ECO:0000313|EMBL:KJL17313.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
Alpha/beta hydrolase fold containing protein n=2 Tax=Microbacterium RepID=H8E6P1_9MICO
hydrolase or acyltransferase
SCNpilot_expt_1000_bf_scaffold_862_29
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24358..25248)
DNA (891bp) protein (297aa)
putative topoisomerase IB; K03168 DNA topoisomerase I [EC:5.99.1.2] id=7719970 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Eukaryotic DNA topoisomerase I, catalytic core {ECO:0000313|EMBL:KJL24901.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_30
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25522..27006
DNA (1485bp) protein (495aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034CA6D0
Multidrug export protein MepA {ECO:0000313|EMBL:KJL33891.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
MATE efflux family protein
Displaying items 1-30 of 115 in total

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