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SCNpilot_expt_1000_bf_scaffold_867

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_867_1
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3..305
DNA (303bp) protein (101aa)
50S ribosomal protein L22 n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003758AE0
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
rplV; ribosomal protein L22; K02890 large subunit ribosomal protein L22
SCNpilot_expt_1000_bf_scaffold_867_2
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


305..919
DNA (615bp) protein (205aa)
30S ribosomal protein S3 n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E518_9MICO
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
rpsC; ribosomal protein S3; K02982 small subunit ribosomal protein S3
SCNpilot_expt_1000_bf_scaffold_867_3
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


1022..1441
DNA (420bp) protein (140aa)
50S ribosomal protein L16 n=1 Tax=Microbacterium sp. TS-1 RepID=U2XPI0_9MICO
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
rplP; ribosomal protein L16/L10E; K02878 large subunit ribosomal protein L16
SCNpilot_expt_1000_bf_scaffold_867_4
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


1441..1755
DNA (315bp) protein (105aa)
50S ribosomal protein L29 n=1 Tax=Microbacterium barkeri RepID=UPI0002F719AC
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rpmC; ribosomal protein L29; K02904 large subunit ribosomal protein L29
SCNpilot_expt_1000_bf_scaffold_867_5
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


1755..2069
DNA (315bp) protein (105aa)
30S ribosomal protein S17 n=1 Tax=Microbacterium sp. 292MF RepID=UPI000362ED35
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
rpsQ; ribosomal protein S17; K02961 small subunit ribosomal protein S17
SCNpilot_expt_1000_bf_scaffold_867_6
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


2066..2434
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Microbacterium sp. TS-1 RepID=U2YWL6_9MICO
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
rplN; ribosomal protein L14; K02874 large subunit ribosomal protein L14
SCNpilot_expt_1000_bf_scaffold_867_7
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


2437..2796
DNA (360bp) protein (120aa)
50S ribosomal protein L24 n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E513_9MICO
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rplX; ribosomal protein L24; K02895 large subunit ribosomal protein L24
SCNpilot_expt_1000_bf_scaffold_867_8
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2796..3386
DNA (591bp) protein (197aa)
50S ribosomal protein L5 n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000346CD3A
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
rplE; ribosomal protein L5; K02931 large subunit ribosomal protein L5
SCNpilot_expt_1000_bf_scaffold_867_9
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


3532..3930
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Microbacterium barkeri RepID=UPI00030EA9DF
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_expt_1000_bf_scaffold_867_10
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


3937..4473
DNA (537bp) protein (179aa)
50S ribosomal protein L6 n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K1U0_9MICO
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rplF; ribosomal protein L6P/L9E; K02933 large subunit ribosomal protein L6
SCNpilot_expt_1000_bf_scaffold_867_11
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


4476..4835
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KC82_9MICO
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
rplR; ribosomal protein L18; K02881 large subunit ribosomal protein L18
SCNpilot_expt_1000_bf_scaffold_867_12
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


4832..5524
DNA (693bp) protein (231aa)
30S ribosomal protein S5 n=1 Tax=Microbacterium sp. 11MF RepID=UPI00035FB69E
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
rpsE; ribosomal protein S5; K02988 small subunit ribosomal protein S5
SCNpilot_expt_1000_bf_scaffold_867_13
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


5524..5709
DNA (186bp) protein (62aa)
50S ribosomal protein L30 n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NF17_MICTS
rpmD; ribosomal protein L30/L7E; K02907 large subunit ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
SCNpilot_expt_1000_bf_scaffold_867_14
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


5709..6299
DNA (591bp) protein (197aa)
50S ribosomal protein L15 n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KG94_9MICO
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
SCNpilot_expt_1000_bf_scaffold_867_15
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


6506..7741
DNA (1236bp) protein (412aa)
preprotein translocase subunit SecY n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000347389E
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
SCNpilot_expt_1000_bf_scaffold_867_16
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7738..8334
DNA (597bp) protein (199aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microba
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3]
Adenylate kinase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K230_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_867_17
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8346..9200
DNA (855bp) protein (285aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
map; methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003043F87 rbh
SCNpilot_expt_1000_bf_scaffold_867_18
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9320..10297)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3V1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KDA07084.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_867_19
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10587..11255
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003154CDE rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM73276.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
protein-disulfide isomerase
SCNpilot_expt_1000_bf_scaffold_867_20
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11423..11644
DNA (222bp) protein (74aa)
Translation initiation factor IF-1 n=2 Tax=Microbacterium RepID=H8E501_9MICO
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
infA; translation initiation factor 1 (IF-1); K02518 translation initiation factor IF-1
SCNpilot_expt_1000_bf_scaffold_867_21
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11710..11826
DNA (117bp) protein (39aa)
50S ribosomal protein L36 n=3 Tax=Microbacterium RepID=H8E500_9MICO
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
rpmJ; 50S ribosomal protein L36
SCNpilot_expt_1000_bf_scaffold_867_22
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


12006..12380
DNA (375bp) protein (125aa)
30S ribosomal protein S13 n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034DFDD5
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
rpsM; ribosomal protein S13; K02952 small subunit ribosomal protein S13
SCNpilot_expt_1000_bf_scaffold_867_23
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


12411..12809
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K1T5_9MICO
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
rpsK; ribosomal protein S11; K02948 small subunit ribosomal protein S11
SCNpilot_expt_1000_bf_scaffold_867_24
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

12941..13930
DNA (990bp) protein (330aa)
rpoA; DNA-directed RNA polymerase, alpha subunit/40 kD subunit; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Microbacterium barkeri RepID=UPI000313FA41 rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_867_25
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


13966..14634
DNA (669bp) protein (223aa)
50S ribosomal protein L17 n=1 Tax=Glaciibacter superstes RepID=UPI0003B6FB01
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SCNpilot_expt_1000_bf_scaffold_867_26
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(14748..15134)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349176F
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_867_27
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15086..16327)
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000318F949
Uncharacterized protein {ECO:0000313|EMBL:EQM73271.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
SCNpilot_expt_1000_bf_scaffold_867_28
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(16381..16698)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D333B5
Two-component system response regulator
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_867_29
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(16739..17101)
DNA (363bp) protein (121aa)
two-component system histidine kinase; K02476 two-component system, CitB family, sensor kinase [EC:2.7.13.3]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D333B5
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_867_30
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

17103..18353
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E79C85 rbh
hypothetical protein; K07793 putative tricarboxylic transport membrane protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
Displaying items 1-30 of 88 in total

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