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SCNpilot_expt_1000_bf_scaffold_1301

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1301_1
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(44..826)
DNA (783bp) protein (261aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM50196.1}; TaxID=37332 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;"
SCNpilot_expt_1000_bf_scaffold_1301_2
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(823..2709)
DNA (1887bp) protein (629aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI000377DF36 rbh
Uncharacterized protein {ECO:0000313|EMBL:ETK34539.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
Helicase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_1301_3
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2706..4025)
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI000374583F rbh
Uncharacterized protein {ECO:0000313|EMBL:ETK34540.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1301_4
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4029..4880)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI00036FCF90
Uncharacterized protein {ECO:0000313|EMBL:ETK34541.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
SCNpilot_expt_1000_bf_scaffold_1301_5
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5148..6257)
DNA (1110bp) protein (370aa)
GTPase Der {ECO:0000313|EMBL:KJL24406.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein id=7719792 bin=CNBR_ACT species=Microlunatus phosphovorus genus=Microlunatus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
GTP-binding protein
SCNpilot_expt_1000_bf_scaffold_1301_6
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6433..7047
DNA (615bp) protein (205aa)
Resolvase n=1 Tax=Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1) RepID=D7GH06_PROFC
Transposase {ECO:0000313|EMBL:KFF59185.1}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
resolvase
SCNpilot_expt_1000_bf_scaffold_1301_7
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

7044..7586
DNA (543bp) protein (181aa)
PF07799 family protein n=1 Tax=Selenomonas sp. CM52 RepID=J5UZV9_9FIRM
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1301_8
Leucobacter komagatae, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7583..7774
DNA (192bp) protein (64aa)
Leucobacter komagatae strain VKM ST2845 L_komagatae_01, whole genome shotgun sequence {ECO:0000313|EMBL:KIP53823.1}; TaxID=55969 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter komagatae.;"
SCNpilot_expt_1000_bf_scaffold_1301_9
Brachybacterium faecium, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7777..8514)
DNA (738bp) protein (246aa)
Site-specific recombinase, DNA invertase Pin n=1 Tax=Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860) RepID=C7MGE8_BRAFD
site-specific recombinase, DNA invertase Pin
Site-specific recombinase, DNA invertase Pin {ECO:0000313|EMBL:ACU86381.1}; TaxID=446465 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860).;"
SCNpilot_expt_1000_bf_scaffold_1301_10
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8554..8925
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000372D5C2
Uncharacterized protein {ECO:0000313|EMBL:KJQ55353.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1301_11
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8925..9251
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003469E1B
Uncharacterized protein {ECO:0000313|EMBL:KJL25939.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
SCNpilot_expt_1000_bf_scaffold_1301_12
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9336..12221
DNA (2886bp) protein (962aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
topA; topoisomerase IA; K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase I n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349C762 rbh
SCNpilot_expt_1000_bf_scaffold_1301_13
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12218..12847
DNA (630bp) protein (210aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D46072 rbh
SCNpilot_expt_1000_bf_scaffold_1301_14
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12889..14046
DNA (1158bp) protein (386aa)
DNA polymerase III subunit tau {ECO:0000313|EMBL:KJL28669.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KJL28669.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
ATPase; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7]
DNA polymerase III subunit delta'''' n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003493995 rbh
SCNpilot_expt_1000_bf_scaffold_1301_15
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14043..15593
DNA (1551bp) protein (517aa)
Carboxylesterase A {ECO:0000313|EMBL:KJQ55348.1}; EC=3.1.1.- {ECO:0000313|EMBL:KJQ55348.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00030C57E2 rbh
hydrolase or acyltransferase
SCNpilot_expt_1000_bf_scaffold_1301_16
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15836..16429
DNA (594bp) protein (198aa)
amidase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KPD6_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM81637.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
SCNpilot_expt_1000_bf_scaffold_1301_17
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16426..16965
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KRL5_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJL31272.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1301_18
Gordonia araii, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16955..17443)
DNA (489bp) protein (163aa)
Putative uncharacterized protein n=1 Tax=Gordonia araii NBRC 100433 RepID=G7H3R8_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:GAB10493.1}; TaxID=1073574 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia araii NBRC 100433.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1301_19
Gordonia araii, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17494..18078
DNA (585bp) protein (195aa)
Putative PadR family transcriptional regulator n=1 Tax=Gordonia araii NBRC 100433 RepID=G7H3R9_9ACTO
Putative PadR family transcriptional regulator {ECO:0000313|EMBL:GAB10494.1}; TaxID=1073574 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia araii NBRC 100433.;"
Transcriptional regulator PadR family protein
SCNpilot_expt_1000_bf_scaffold_1301_20
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18063..18722
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00031620E0
Contig_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIP90963.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1301_21
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18953..19471
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X8Z1_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV81089.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_expt_1000_bf_scaffold_1301_22
Amycolatopsis sp. MJM2582, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19502..20329)
DNA (828bp) protein (276aa)
beta-lactamase n=1 Tax=Amycolatopsis alba RepID=UPI00037B8D34 rbh
Beta-lactamase {ECO:0000313|EMBL:KFZ78602.1}; TaxID=1427749 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis sp. MJM2582.;"
beta-lactamase class C rbh
SCNpilot_expt_1000_bf_scaffold_1301_23
unknown

Not on your lists

20436..20936
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1LB28_9MICO
SCNpilot_expt_1000_bf_scaffold_1301_24
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(21199..21861)
DNA (663bp) protein (221aa)
fasciclin n=1 Tax=Microbacterium barkeri RepID=UPI0002EA2794 rbh
mpt83; cell surface lipoprotein MPT83
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1301_25
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22078..23787
DNA (1710bp) protein (570aa)
Thiol-disulfide oxidoreductase YkuV {ECO:0000313|EMBL:KJL25951.1}; EC=1.8.-.- {ECO:0000313|EMBL:KJL25951.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E19B75 rbh
cytochrome c biogenesis protein
SCNpilot_expt_1000_bf_scaffold_1301_26
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23822..24421
DNA (600bp) protein (200aa)
RNA polymerase sigma factor SigK n=1 Tax=Microbacterium barkeri RepID=UPI0002E04C4D rbh
ECF RNA polymerase sigma factor SigK {ECO:0000313|EMBL:KJQ55342.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_1301_27
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24418..25224
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034516D2
Anti-sigma-K factor rskA {ECO:0000313|EMBL:KJL35214.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1301_28
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

25246..25875
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KDE9_9MICO rbh
DNA-directed RNA polymerase, beta subunit/140 kD subunit
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1301_29
unknown

Not on your lists

comp(26002..26268)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1301_30
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

26433..26903
DNA (471bp) protein (157aa)
branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; K02619 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E689CF
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
Displaying items 1-30 of 65 in total

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