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SCNpilot_expt_1000_bf_scaffold_1484

Search features with annotation key words

Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1484_1
Dermacoccus sp. Ellin185, Dermacoccus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(155..505)
DNA (351bp) protein (117aa)
Integrase core domain protein n=1 Tax=Dermacoccus sp. Ellin185 RepID=E3BD31_9MICO
Integrase core domain protein {ECO:0000313|EMBL:EFP57042.1}; TaxID=188626 species="Bacteria; Actinobacteria; Micrococcales; Dermacoccaceae; Dermacoccus.;" source="Dermacoccus sp. Ellin185.;"
integrase catalytic subunit
SCNpilot_expt_1000_bf_scaffold_1484_2
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(466..1194)
DNA (729bp) protein (243aa)
transposase IS401 n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI0003635C47 rbh
Integrase core domain protein {ECO:0000313|EMBL:KJL29939.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
transposase
SCNpilot_expt_1000_bf_scaffold_1484_3
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1191..1505)
DNA (315bp) protein (105aa)
Probable transposase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AJY1_9ACTN
Transposase {ECO:0000313|EMBL:KJL29938.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
transposase
SCNpilot_expt_1000_bf_scaffold_1484_4
Gordonia paraffinivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1768..2544)
DNA (777bp) protein (259aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1223543 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia paraffinivorans NBRC 108238.;"
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18] rbh
Methionine aminopeptidase n=1 Tax=Gordonia paraffinivorans NBRC 108238 RepID=M3V7N7_9ACTO rbh
SCNpilot_expt_1000_bf_scaffold_1484_5
Gordonia paraffinivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2613..2909
DNA (297bp) protein (99aa)
Putative Xre family DNA-binding protein n=1 Tax=Gordonia paraffinivorans NBRC 108238 RepID=M3TXB8_9ACTO
Putative Xre family DNA-binding protein {ECO:0000313|EMBL:GAC86286.1}; TaxID=1223543 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia paraffinivorans NBRC 108238.;"
helix-turn-helix domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1484_6
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2944..3915)
DNA (972bp) protein (324aa)
AraC family transcriptional regulator n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B3B119 rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:KDN22466.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
AraC family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1484_7
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4781..5098
DNA (318bp) protein (106aa)
Putative uncharacterized protein n=1 Tax=Streptomyces sp. AA4 RepID=D9VDJ0_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EFL10054.1}; TaxID=591158 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1484_8
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5178..6446
DNA (1269bp) protein (423aa)
ABC transporter ATP-binding protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B6E76A rbh
ABC transporter; K09687 antibiotic transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:AEB45332.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
SCNpilot_expt_1000_bf_scaffold_1484_9
unknown

Not on your lists

6443..7225
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B3D9B7 rbh
ABC transporter
SCNpilot_expt_1000_bf_scaffold_1484_10
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7225..8445
DNA (1221bp) protein (407aa)
dyp-type peroxidase family protein; K15733 dye decolorizing peroxidase [EC:1.11.1.19]
peroxidase n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B64B18 rbh
Uncharacterized protein {ECO:0000313|EMBL:ACL11851.1}; TaxID=1665 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis.;"
SCNpilot_expt_1000_bf_scaffold_1484_11
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8553..9026
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B42026 rbh
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:CCG01658.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
SCNpilot_expt_1000_bf_scaffold_1484_12
Nocardia asteroides, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9041..9490
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Rhodococcus RepID=UPI00036A529F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAD86727.1}; TaxID=1110697 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia asteroides NBRC 15531.;"
SCNpilot_expt_1000_bf_scaffold_1484_13
Mycobacterium phlei, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9564..10400
DNA (837bp) protein (279aa)
transposase n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B771B8 rbh
Transposase {ECO:0000313|EMBL:EID11105.1}; TaxID=1150599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium phlei RIVM601174.;"
transposase
SCNpilot_expt_1000_bf_scaffold_1484_14
Mycobacterium phlei, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10384..10848
DNA (465bp) protein (155aa)
Transposase n=2 Tax=Mycobacterium RepID=I0RJ02_MYCPH
Transposase {ECO:0000313|EMBL:EID11105.1}; TaxID=1150599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium phlei RIVM601174.;"
transposase
SCNpilot_expt_1000_bf_scaffold_1484_15
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11410..12828)
DNA (1419bp) protein (473aa)
Putative branched-chain amino acid ABC transporter n=1 Tax=Arthrobacter aurescens (strain TC1) RepID=A1RDI4_ARTAT
Uncharacterized protein {ECO:0000313|EMBL:AHH99837.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
putative branched-chain amino acid ABC transporter; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1484_16
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12832..13140)
DNA (309bp) protein (103aa)
Regulatory protein ArsR n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKM7_PSEUX
ArsR family transcriptional regulator
Regulatory protein ArsR {ECO:0000313|EMBL:AEA23234.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_expt_1000_bf_scaffold_1484_17
Selaginella moellendorffii, Selaginella, Selaginellales, Lycopodiidae, Streptophyta, Viridiplantae

Not on your lists

comp(13154..14179)
DNA (1026bp) protein (342aa)
Putative uncharacterized protein n=1 Tax=Selaginella moellendorffii RepID=D8T1P7_SELML
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EFJ09424.1}; TaxID=88036 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella.;" source="Selaginella moellendorffii (Spikemoss).;"
SCNpilot_expt_1000_bf_scaffold_1484_18
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14176..15546)
DNA (1371bp) protein (457aa)
Putative indoleacetamide hydrolase n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K2X6_SACES rbh
putative indoleacetamide hydrolase rbh
Putative indoleacetamide hydrolase {ECO:0000313|EMBL:CCH31224.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
SCNpilot_expt_1000_bf_scaffold_1484_19
Gordonia alkanivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15674..16981
DNA (1308bp) protein (436aa)
Cytosine permease n=1 Tax=Gordonia alkanivorans NBRC 16433 RepID=F9W161_9ACTO rbh
Cytosine permease {ECO:0000313|EMBL:GAA14600.1}; TaxID=1027371 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia alkanivorans NBRC 16433.;"
permease for cytosine/purines uracil thiamine allantoin rbh
SCNpilot_expt_1000_bf_scaffold_1484_20
Streptomyces hygroscopicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17036..17776)
DNA (741bp) protein (247aa)
Hydrolase n=2 Tax=Streptomyces hygroscopicus subsp. jinggangensis RepID=H2JY01_STRHJ rbh
hydrolase rbh
Hydrolase {ECO:0000313|EMBL:AEY86358.1}; TaxID=1133850 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces hygroscopicus subsp. jinggangensis (strain 5008).;"
SCNpilot_expt_1000_bf_scaffold_1484_21
Streptomyces sp. HPH0547, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17907..18722
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. HPH0547 RepID=S3C3S4_9ACTO rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD95534.1}; TaxID=1203592 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HPH0547.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1484_22
unknown

Not on your lists

comp(18730..18837)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1484_23
unknown

Not on your lists

18973..19161
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1484_24
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

comp(19174..20028)
DNA (855bp) protein (285aa)
transposase IS401 n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI0003602B30 rbh
integrase catalytic subunit
Tax=RBG_16_Acidobacteria_64_8_curated
SCNpilot_expt_1000_bf_scaffold_1484_25
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20072..21580
DNA (1509bp) protein (503aa)
type VI secretion protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B454F5
Uncharacterized protein {ECO:0000313|EMBL:CDJ99363.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1484_26
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21636..22109
DNA (474bp) protein (158aa)
single-stranded DNA-binding protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B38AD4
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
single-stranded DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_1484_27
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22121..22744
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B481DD rbh
Uncharacterized protein {ECO:0000313|EMBL:CDJ99361.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1484_28
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22719..22940
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1) RepID=D7GDL9_PROFC
Uncharacterized protein {ECO:0000313|EMBL:CDJ99360.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1484_29
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22933..24123
DNA (1191bp) protein (397aa)
integrase n=1 Tax=Kocuria rhizophila RepID=UPI00035E712B rbh
Phage integrase {ECO:0000313|EMBL:CDJ99359.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
int; phage integrase rbh
SCNpilot_expt_1000_bf_scaffold_1484_30
Jonesia denitrificans, Jonesia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24587..27613)
DNA (3027bp) protein (1009aa)
SMC domain protein n=1 Tax=Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) RepID=C7QZ95_JONDD rbh
SMC domain-containing protein rbh
SMC domain protein {ECO:0000313|EMBL:ACV09393.1}; TaxID=471856 species="Bacteria; Actinobacteria; Micrococcales; Jonesiaceae; Jonesia.;" source="Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134); (Listeria denitrificans).;"
Displaying items 1-30 of 113 in total

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