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SCNpilot_expt_1000_bf_scaffold_1788

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1788_1
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

77..1609
DNA (1533bp) protein (511aa)
acyl-CoA synthetase (EC:2.3.1.86); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
Acyl-CoA synthetase n=1 Tax=Rhodococcus ruber BKS 20-38 RepID=M2Y1L6_9NOCA rbh
Acyl-CoA synthetase {ECO:0000313|EMBL:EME67011.1}; TaxID=1278076 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber BKS 20-38.;"
SCNpilot_expt_1000_bf_scaffold_1788_2
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1633..2109)
DNA (477bp) protein (159aa)
single-stranded DNA-binding protein n=1 Tax=Microbacterium barkeri RepID=UPI00031A5B72
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
smpB; tmRNA-binding protein; K03664 SsrA-binding protein
SCNpilot_expt_1000_bf_scaffold_1788_3
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2153..3067)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003119B4C rbh
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
cell division protein; K09811 cell division transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1788_4
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3064..4071)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C3D79 rbh
Contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIP95855.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
ftsE; ATPase; K09812 cell division transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1788_5
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4129..5238)
DNA (1110bp) protein (370aa)
Peptide chain release factor 2 n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KIT0_9MICO rbh
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
prfB; protein chain release factor B; K02836 peptide chain release factor 2
SCNpilot_expt_1000_bf_scaffold_1788_6
unknown

Not on your lists

comp(5538..5936)
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1788_7
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5964..6533
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F01728
Major facilitator transporter {ECO:0000313|EMBL:EQM77244.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
permease of the major facilitator superfamily
SCNpilot_expt_1000_bf_scaffold_1788_8
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6539..6967)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000366653F
Uncharacterized protein {ECO:0000313|EMBL:KJL23761.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
putative secreted protein
SCNpilot_expt_1000_bf_scaffold_1788_9
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6964..7476)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034A8F26
TadE family protein {ECO:0000313|EMBL:EYT58514.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1788_10
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7445..7846)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KIT4_9MICO
TadE-like protein {ECO:0000313|EMBL:KJQ54594.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1788_11
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7852..8037)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XIY1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KDA06074.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1788_12
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8088..9026)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KIT5_9MICO rbh
Bacterial type II secretion system protein F domain protein {ECO:0000313|EMBL:KJQ54592.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
putative pilus assembly protein; K12511 tight adherence protein C
SCNpilot_expt_1000_bf_scaffold_1788_13
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9023..9880)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00030D20FC rbh
Uncharacterized protein {ECO:0000313|EMBL:KJL28985.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
conserved membrane protein, putative pilus assembly protein
SCNpilot_expt_1000_bf_scaffold_1788_14
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9877..11019)
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KLU3_9MICO rbh
Pilus assembly protein CpaF {ECO:0000313|EMBL:KDA06071.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
putative ATPase, type II/type IV pathway secretion protein; K02283 pilus assembly protein CpaF
SCNpilot_expt_1000_bf_scaffold_1788_15
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

11272..12054
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000309F0B0 rbh
hypothetical protein; K03975 membrane-associated protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1788_16
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12095..12943)
DNA (849bp) protein (283aa)
Probable DNA repair protein MTS1_00524 n=1 Tax=Microbacterium sp. TS-1 RepID=U2XIZ7_9MICO
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein; K10979 DNA end-binding protein Ku
SCNpilot_expt_1000_bf_scaffold_1788_17
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13034..15505
DNA (2472bp) protein (824aa)
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] rbh
ATP-dependent DNA ligase n=1 Tax=Microbacterium sp. TS-1 RepID=U2X6T1_9MICO
ATP-dependent DNA ligase {ECO:0000313|EMBL:GAD33181.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
SCNpilot_expt_1000_bf_scaffold_1788_18
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15506..16426)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000348DBF7 rbh
Cation transporter {ECO:0000313|EMBL:EYT58490.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
Co/Zn/Cd efflux system component; K03295 cation efflux system protein, CDF family
SCNpilot_expt_1000_bf_scaffold_1788_19
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(16505..17098)
DNA (594bp) protein (198aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" sour
xanthosine triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
Non-canonical purine NTP pyrophosphatase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KLV4_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_1788_20
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17095..17796)
DNA (702bp) protein (234aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
rph; RNase PH; K00989 ribonuclease PH [EC:2.7.7.56]
Ribonuclease PH n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KJP3_9MICO
SCNpilot_expt_1000_bf_scaffold_1788_21
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17826..18680)
DNA (855bp) protein (285aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
murI; glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3]
Glutamate racemase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K910_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_1788_22
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18692..19639)
DNA (948bp) protein (316aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795};; N-acetylmuramic acid 6-phosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00068}; N-acetylmuramic acid 6-phosphate lyase {ECO:0000256|HAMAP-Rule:MF_00068}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Mi
murQ; N-acetylmuramic acid 6-phosphate etherase MurQ (EC:4.2.-.-) rbh
N-acetylmuramic acid-6-phosphate etherase n=1 Tax=Agromyces italicus RepID=UPI0003B4562A rbh
SCNpilot_expt_1000_bf_scaffold_1788_23
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19685..21169)
DNA (1485bp) protein (495aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
O-glycosyl hydrolase 3 protein; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] rbh
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KU36_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_1788_24
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21257..22594
DNA (1338bp) protein (446aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|SAAS:SAAS00075163};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
nicotinic acid phosphoribosyltransferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11]
nicotinate phosphoribosyltransferase n=1 Tax=Microbacterium barkeri RepID=UPI00031037DE rbh
SCNpilot_expt_1000_bf_scaffold_1788_25
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22651..22917)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00035DD7A5
Uncharacterized protein {ECO:0000313|EMBL:EYT58485.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1788_26
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22967..24535)
DNA (1569bp) protein (523aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00037F287D rbh
Uncharacterized protein {ECO:0000313|EMBL:KJQ54574.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein; K01992 ABC-2 type transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1788_27
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(24511..26622)
DNA (2112bp) protein (704aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00038069E1 rbh
multidrug ABC transporter ATPase; K01990 ABC-2 type transport system ATP-binding protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1788_28
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26857..27549
DNA (693bp) protein (231aa)
UDP-N-acetylglucosamine pyrophosphorylase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KIW2_9MICO rbh
Contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIP95827.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
sugar nucleotidyltransferase
SCNpilot_expt_1000_bf_scaffold_1788_29
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27649..28641
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003479AAD
Uncharacterized protein {ECO:0000313|EMBL:KJL23161.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1788_30
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28720..29025
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00035C7724
Uncharacterized protein {ECO:0000313|EMBL:KJL27466.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
Displaying items 1-30 of 31 in total

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