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SCNpilot_expt_1000_bf_scaffold_508

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_508_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..118)
DNA (117bp) protein (39aa)
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:AKH43664.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AKH43664.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZY89_9SPHN
SCNpilot_expt_1000_bf_scaffold_508_2
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(428..1531)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRX3_RHOCS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACI98209.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_508_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1823..2338
DNA (516bp) protein (172aa)
50S ribosomal protein L10 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y3E6_9SPHN
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_expt_1000_bf_scaffold_508_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2416..2793
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHS6_9SPHN
50S ribosomal protein L7/L12 {ECO:0000313|EMBL:AKH43659.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_expt_1000_bf_scaffold_508_5
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2906..3583
DNA (678bp) protein (226aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7FME3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ERP86063.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_508_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3605..4165)
DNA (561bp) protein (187aa)
copper-containing nitrite reductase (EC:1.7.2.1); K00368 nitrite reductase (NO-forming) [EC:1.7.2.1]
Copper-containing nitrite reductase n=2 Tax=Oligotropha carboxidovorans RepID=B6JIX6_OLICO
Cytochrome c2 iso-2 {ECO:0000313|EMBL:AKH43658.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_508_7
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4162..5406)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PVQ3_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDI09133.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_expt_1000_bf_scaffold_508_8
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5804..6091
DNA (288bp) protein (96aa)
10 kDa chaperonin n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PA85_9SPHN
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
groES; molecular chaperone GroES; K04078 chaperonin GroES
SCNpilot_expt_1000_bf_scaffold_508_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6147..7778
DNA (1632bp) protein (544aa)
60 kDa chaperonin n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZYA0_9SPHN rbh
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
groEL; chaperonin GroEL
SCNpilot_expt_1000_bf_scaffold_508_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7908..8315
DNA (408bp) protein (136aa)
attachment protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0C8E
Attachment protein {ECO:0000313|EMBL:AKH43654.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
AtsE
SCNpilot_expt_1000_bf_scaffold_508_11
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

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8348..10336
DNA (1989bp) protein (663aa)
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77) rbh
Protein-L-isoaspartate O-methyltransferase n=1 Tax=alpha proteobacterium JLT2015 RepID=M2SG29_9PROT rbh
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:EMD84315.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
SCNpilot_expt_1000_bf_scaffold_508_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10396..11190
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UTF3_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH43653.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_508_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11313..12350
DNA (1038bp) protein (346aa)
Extended-spectrum beta-lactamase PER-1 {ECO:0000313|EMBL:AKH43652.1}; EC=3.5.2.6 {ECO:0000313|EMBL:AKH43652.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
beta-lactamase (EC:3.5.2.6) rbh
Putative beta-lactamase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZQ63_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_508_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12405..12671)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHC9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD47510.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_508_15
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12872..15739
DNA (2868bp) protein (956aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] rbh
DNA polymerase I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBP7_NOVAD rbh
DNA polymerase {ECO:0000313|EMBL:KHL24850.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
SCNpilot_expt_1000_bf_scaffold_508_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16071..17201)
DNA (1131bp) protein (377aa)
Alanine dehydrogenase {ECO:0000313|EMBL:AKH43104.1}; EC=1.4.1.1 {ECO:0000313|EMBL:AKH43104.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
alanine dehydrogenase and pyridine nucleotide transhydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YK90_9SPHN
SCNpilot_expt_1000_bf_scaffold_508_17
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(17583..17975)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037F8AB7
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABJ84153.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_1000_bf_scaffold_508_18
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17978..19219)
DNA (1242bp) protein (414aa)
Putative esterase n=1 Tax=Sphingobium sp. SYK-6 PF8_9SPHN">RepID=G2IPF8_9SPHN
GDSL-like Lipase/Acylhydrolase {ECO:0000313|EMBL:AKH43101.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative esterase
SCNpilot_expt_1000_bf_scaffold_508_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19245..19859)
DNA (615bp) protein (205aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILD3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43098.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_508_20
unknown

Not on your lists

comp(19930..20103)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_508_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20221..22764)
DNA (2544bp) protein (848aa)
DNA translocase FtsK n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A1R1_9SPHN rbh
DNA translocase FtsK {ECO:0000313|EMBL:AKH43097.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family rbh
SCNpilot_expt_1000_bf_scaffold_508_22
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22906..23448)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003162F5F
thiamine monophosphate synthase
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_1000_bf_scaffold_508_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23470..24132
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6A4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH43095.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K06997 rbh
SCNpilot_expt_1000_bf_scaffold_508_24
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24308..25351)
DNA (1044bp) protein (348aa)
rod shape-determining protein MreB n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003756A7E
Rod shape-determining protein MreB {ECO:0000313|EMBL:AKH43093.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
rod shape-determining protein MreB
SCNpilot_expt_1000_bf_scaffold_508_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25501..26400)
DNA (900bp) protein (300aa)
Acetylglutamate kinase {ECO:0000313|EMBL:AKH43053.1}; EC=2.7.2.8 {ECO:0000313|EMBL:AKH43053.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
acetylglutamate kinase; K00930 acetylglutamate kinase [EC:2.7.2.8]
Acetylglutamate kinase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZTD7_9SPHN
SCNpilot_expt_1000_bf_scaffold_508_26
unknown

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comp(26479..26631)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_508_27
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26703..26927)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HN34_9SPHN
Lysyl-tRNA synthetase {ECO:0000313|EMBL:KKC26391.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
lysyl-tRNA synthetase
SCNpilot_expt_1000_bf_scaffold_508_28
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26996..27430)
DNA (435bp) protein (145aa)
Alr0761 protein n=1 Tax=Nostoc sp. (strain PCC 7120 / UTEX 2576) RepID=Q8YYT5_NOSS1
Uncharacterized protein {ECO:0000313|EMBL:KEO87545.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_508_29
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27607..28617
DNA (1011bp) protein (337aa)
enoyl-ACP reductase (EC:1.3.1.-); K02371 enoyl-[acyl carrier protein] reductase II [EC:1.3.1.-]
Putative 2-nitropropane dioxygenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHQ5_9SPHN
Putative 2-nitropropane dioxygenase {ECO:0000313|EMBL:GAD47467.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_508_30
gamma proteobacterium NOR5-3, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28751..29545
DNA (795bp) protein (265aa)
Protein LigF n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KG97_9GAMM
Protein LigF {ECO:0000313|EMBL:EED32863.1}; TaxID=566466 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium NOR5-3.;"
glutathione S-transferase-like protein
Displaying items 1-30 of 90 in total

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