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SCNpilot_expt_1000_bf_scaffold_600

Search features with annotation key words

Displaying items 1-30 of 101 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_600_1
unknown

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3..119
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_600_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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251..862
DNA (612bp) protein (204aa)
Uncharacterized protein {ECO:0000313|EMBL:AKH44111.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_600_3
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1096..1521
DNA (426bp) protein (142aa)
CBS domain containing protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11EL1_MESSB
hypothetical protein
CBS domain containing protein {ECO:0000313|EMBL:ABG64164.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_600_4
Teredinibacter turnerae, Teredinibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1546..2862)
DNA (1317bp) protein (439aa)
Carbohydrate esterase family 15 domain protein n=1 Tax=Teredinibacter turnerae (strain ATCC 39867 / T7901) RepID=C5BN23_TERTT
carbohydrate esterase family 15 domain-containing protein
Carbohydrate esterase family 15 domain protein {ECO:0000313|EMBL:ACR12575.1}; TaxID=377629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadales genera incertae sedis; Teredinibacter.;" source="Teredinibacter turnerae (strain ATCC 39867 / T7901).;"
SCNpilot_expt_1000_bf_scaffold_600_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2925..3449)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P822_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41324.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_600_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3628..4530)
DNA (903bp) protein (301aa)
Ribosomal protein L11 methyltransferase {ECO:0000313|EMBL:AKH41325.1}; EC=2.1.1.- {ECO:0000313|EMBL:AKH41325.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
50S ribosomal protein L11 methylase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
Ribosomal protein L11 methylase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N9W3_ERYLH
SCNpilot_expt_1000_bf_scaffold_600_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4527..4988)
DNA (462bp) protein (154aa)
Metallo-beta-lactamase L1 {ECO:0000313|EMBL:AKH41326.1}; EC=3.5.2.6 {ECO:0000313|EMBL:AKH41326.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Beta-lactamase-like protein n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1DXY8_9GAMM
beta-lactamase-like protein
SCNpilot_expt_1000_bf_scaffold_600_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5397..6134)
DNA (738bp) protein (246aa)
3-oxoacyl-[acyl-carrier-protein] reductase FabG {ECO:0000313|EMBL:AKH41327.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AKH41327.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBN7_9SPHN rbh
3-oxoacyl-ACP reductase rbh
SCNpilot_expt_1000_bf_scaffold_600_9
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6217..6618
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N9W6_ERYLH
hypothetical protein; K00241 succinate dehydrogenase cytochrome b556 subunit
Uncharacterized protein {ECO:0000313|EMBL:ABC63525.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_expt_1000_bf_scaffold_600_10
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6629..7096
DNA (468bp) protein (156aa)
succinate dehydrogenase hydrophobic membrane anchor protein (EC:1.3.99.1); K00242 succinate dehydrogenase membrane anchor subunit
Succinate dehydrogenase hydrophobic membrane anchor subunit n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIA1_9SPHN
Succinate dehydrogenase hydrophobic membrane anchor subunit {ECO:0000313|EMBL:GAD48035.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_600_11
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7093..8940
DNA (1848bp) protein (616aa)
succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051, ECO:0000313|EMBL:CCA93825.1}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Succinate dehydrogenase flavoprotein subunit n=2 Tax=Novosphingobium RepID=F6IGY1_9SPHN
SCNpilot_expt_1000_bf_scaffold_600_12
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8937..10061
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI000379B6CE
beta-lactamase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_1000_bf_scaffold_600_13

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comp(10202..10495)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003818319
Plasmid stabilization system {ECO:0000313|EMBL:EQD48245.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
plasmid stabilization protein ParE
SCNpilot_expt_1000_bf_scaffold_600_14
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10495..10737)
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00037DE56C
hypothetical protein; K07746 hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_expt_1000_bf_scaffold_600_15
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10780..11394)
DNA (615bp) protein (205aa)
peptidyl-prolyl cis-trans isomerase A; K03767 peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P814_9SPHN
Peptidylprolyl isomerase {ECO:0000313|EMBL:KHL25671.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
SCNpilot_expt_1000_bf_scaffold_600_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11436..11867)
DNA (432bp) protein (144aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GVR5_SPHAL
HTH-type transcriptional repressor NsrR {ECO:0000313|EMBL:AKH41332.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
BadM/Rrf2 family transcriptional regulator; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_600_17
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11947..12447
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZS9_9SPHN
Group 3 hemoglobin ctb-like protein {ECO:0000313|EMBL:AKH41333.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K06886 hemoglobin
SCNpilot_expt_1000_bf_scaffold_600_18
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12440..12958
DNA (519bp) protein (173aa)
Uncharacterized protein {ECO:0000313|EMBL:KEO89702.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
SCNpilot_expt_1000_bf_scaffold_600_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12983..14155)
DNA (1173bp) protein (391aa)
L-lactate dehydrogenase {ECO:0000313|EMBL:AKH41335.1}; EC=1.1.2.3 {ECO:0000313|EMBL:AKH41335.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
lactate dehydrogenase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00030BC1A1 rbh
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_600_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14243..14665
DNA (423bp) protein (141aa)
beta-lactamase n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225EA38
Penicillinase repressor {ECO:0000313|EMBL:AKH41336.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative transcriptional regulator; K07737 putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_600_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14662..16320
DNA (1659bp) protein (553aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225EA39 rbh
Regulatory protein BlaR1 {ECO:0000313|EMBL:AKH41337.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_600_22
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16409..17287)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9LA18_9SPHN rbh
Zinc metalloprotease {ECO:0000313|EMBL:KHL25672.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein; K07054 rbh
SCNpilot_expt_1000_bf_scaffold_600_23
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17381..18136
DNA (756bp) protein (252aa)
3-hydroxybutyrate dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] rbh
3-hydroxybutyrate dehydrogenase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P809_9SPHN rbh
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:KHL25673.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
SCNpilot_expt_1000_bf_scaffold_600_24
unknown

Not on your lists

18206..18592
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_600_25
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18720..20171
DNA (1452bp) protein (484aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIS1_9SPHN
inosine-5'-monophosphate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_600_26
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20277..21455
DNA (1179bp) protein (393aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000313|EMBL:AKH41343.1}; EC=2.1.1.176 {ECO:0000313|EMBL:AKH41343.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Fmu (Sun) n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGX3_9SPHN
SCNpilot_expt_1000_bf_scaffold_600_27
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21470..22021
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N9Y2_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:KHL25756.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_600_28
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22090..22638)
DNA (549bp) protein (183aa)
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
putative (di)nucleoside polyphosphate hydrolase (EC:3.6.1.-); K08311 putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
RNA pyrophosphohydrolase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9LA15_9SPHN
SCNpilot_expt_1000_bf_scaffold_600_29
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22788..24761
DNA (1974bp) protein (658aa)
2-oxoglutarate oxidoreductase subunit KorA {ECO:0000313|EMBL:AKH41346.1}; EC=1.2.-.- {ECO:0000313|EMBL:AKH41346.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] rbh
2-oxoglutarate ferredoxin oxidoreductase alpha subunit n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P802_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_600_30
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24758..25792
DNA (1035bp) protein (345aa)
2-oxoglutarate oxidoreductase subunit KorB {ECO:0000313|EMBL:AKH41347.1}; EC=1.2.-.- {ECO:0000313|EMBL:AKH41347.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
2-oxoglutarate ferredoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] rbh
2-oxoglutarate ferredoxin oxidoreductase subunit beta n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P801_9SPHN rbh
Displaying items 1-30 of 101 in total

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