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SCNpilot_expt_1000_bf_scaffold_1640

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1640_1
unknown

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1..87
DNA (87bp) protein (29aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1640_2
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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104..1240
DNA (1137bp) protein (379aa)
NAD(P) transhydrogenase subunit alpha (EC:1.6.1.2); K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P) transhydrogenase subunit alpha n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFS0_9SPHN
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCNpilot_expt_1000_bf_scaffold_1640_3
unknown

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1237..1734
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1640_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1744..2025
DNA (282bp) protein (94aa)
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:AKH42017.1}; EC=1.6.1.2 {ECO:0000313|EMBL:AKH42017.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
NAD(P) transhydrogenase subunit alpha transmembrane protein; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
Putative NAD(P) transhydrogenase subunit alpha PART 2 transmembrane protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G789_NOVAD
SCNpilot_expt_1000_bf_scaffold_1640_5
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2041..3510
DNA (1470bp) protein (490aa)
NAD(P) transhydrogenase subunit beta (EC:1.6.1.2); K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2] rbh
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204, ECO:0000313|EMBL:CCA93576.1}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204, ECO:0000313|EMBL:CCA93576.1};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFR8_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_1640_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3567..4277
DNA (711bp) protein (237aa)
Putative amino-acid racemase {ECO:0000313|EMBL:AKH42014.1}; EC=5.1.1.- {ECO:0000313|EMBL:AKH42014.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
aspartate racemase; K01779 aspartate racemase [EC:5.1.1.13]
Aspartate racemase family protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIX9_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_1640_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4403..5563
DNA (1161bp) protein (387aa)
Deoxyguanosinetriphosphate triphosphohydrolase {ECO:0000313|EMBL:AKH42013.1}; EC=3.1.5.1 {ECO:0000313|EMBL:AKH42013.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
deoxyguanosinetriphosphate triphosphohydrolase; K01129 dGTPase [EC:3.1.5.1]
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y4S9_9SPHN
SCNpilot_expt_1000_bf_scaffold_1640_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5679..6257
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000377B813
Uncharacterized protein {ECO:0000313|EMBL:AKH42012.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
nucleoside-diphosphate-sugar epimerase
SCNpilot_expt_1000_bf_scaffold_1640_9
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6290..6418)
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PBI3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EDL48931.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1640_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6475..7392)
DNA (918bp) protein (306aa)
transporter n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD10F9 rbh
Riboflavin transporter {ECO:0000313|EMBL:AKH42009.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter rbh
SCNpilot_expt_1000_bf_scaffold_1640_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7487..7717
DNA (231bp) protein (77aa)
Uncharacterized protein {ECO:0000313|EMBL:AKH42008.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_1640_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7733..9247)
DNA (1515bp) protein (505aa)
Type II secretion system protein E n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G777_NOVAD rbh
Putative conjugal transfer protein {ECO:0000313|EMBL:AKH42007.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
type II secretion system protein E; K02283 pilus assembly protein CpaF rbh
SCNpilot_expt_1000_bf_scaffold_1640_13
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9336..11141)
DNA (1806bp) protein (602aa)
Put. Transmembrane protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FQ88_SORC5
transmembrane protein
Tax=BJP_IG2069_Desfulfarculales_53_13
SCNpilot_expt_1000_bf_scaffold_1640_14
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11134..11745)
DNA (612bp) protein (204aa)
Methyltransferase domain protein n=3 Tax=Vibrio cholerae RepID=F9ALR1_VIBCL
Uncharacterized protein {ECO:0000313|EMBL:EOS39939.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
SCNpilot_expt_1000_bf_scaffold_1640_15
Parvularcula bermudensis, Parvularcula, Parvularculales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11897..12265)
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TDX7_PARBH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADM10426.1}; TaxID=314260 species="Bacteria; Proteobacteria; Alphaproteobacteria; Parvularculales; Parvularculaceae; Parvularcula.;" source="Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC; 12087).;"
SCNpilot_expt_1000_bf_scaffold_1640_16
Leptospira meyeri, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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comp(12269..12955)
DNA (687bp) protein (229aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EMJ87159.1}; EC=2.4.-.- {ECO:0000313|EMBL:EMJ87159.1};; TaxID=1218585 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira meyeri serovar Semaranga str. Veldrot Semarang 173.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Leptospira meyeri serovar Semaranga str. Veldrot Semarang 173 RepID=M6C657_LEPME
glycosyl transferase family protein
SCNpilot_expt_1000_bf_scaffold_1640_17
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13370..14302
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G776_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHL26324.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
SCNpilot_expt_1000_bf_scaffold_1640_18
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14259..15713)
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZRW0_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD48109.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1640_19
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15877..16134)
DNA (258bp) protein (86aa)
atpC; ATP synthase F0F1 subunit epsilon; K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
ATP synthase epsilon chain n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WAP2_9SPHN
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
SCNpilot_expt_1000_bf_scaffold_1640_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16280..17071)
DNA (792bp) protein (264aa)
atpD; ATP synthase subunit beta; K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
ATP synthase subunit beta n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR45_9SPHN
SCNpilot_expt_1000_bf_scaffold_1640_21
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17047..17712)
DNA (666bp) protein (222aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
F-type H+-transporting ATPase subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]
ATP synthase subunit beta n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y4S3_9SPHN
SCNpilot_expt_1000_bf_scaffold_1640_22
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17730..18077)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N8Z3_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC63848.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_expt_1000_bf_scaffold_1640_23
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18074..18871)
DNA (798bp) protein (266aa)
F-type H+-transporting ATPase subunit gamma (EC:3.6.3.14); K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14]
ATP synthase gamma chain n=1 Tax=Sphingomonas sp. LH128 RepID=J8VPS8_9SPHN
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
SCNpilot_expt_1000_bf_scaffold_1640_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19015..19560)
DNA (546bp) protein (182aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
F0F1 ATP synthase subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]
ATP synthase subunit alpha n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZRV5_9SPHN
Displaying 24 items

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