ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2846

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2846_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

63..875
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037606A5 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF17706.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2846_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1087..2124
DNA (1038bp) protein (346aa)
histidine kinase n=1 Tax=Niabella aurantiaca RepID=UPI00035DB229 rbh
Histidine kinase {ECO:0000313|EMBL:AHF15809.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
putative signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_2846_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2168..2902
DNA (735bp) protein (245aa)
LytR family transcriptional regulator n=1 Tax=Niabella aurantiaca RepID=UPI00037F38C9 rbh
LytR family transcriptional regulator {ECO:0000313|EMBL:AHF15808.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
LytTR family two component transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2846_4
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3090..3416
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y2J1_PEDHD
hypothetical protein; K09946 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU05201.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_2846_5
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3550..4092
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JHA7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR68200.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2846_6
unknown

Not on your lists

4103..4708
DNA (606bp) protein (202aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2846_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4710..4922
DNA (213bp) protein (71aa)
XRE family transcriptional regulator n=1 Tax=Capnocytophaga cynodegmi RepID=UPI00037B984B
XRE family transcriptional regulator {ECO:0000313|EMBL:AHF15829.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
XRE family transcriptional regulator; K07727 putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2846_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5078..6925)
DNA (1848bp) protein (616aa)
xenobiotic-transporting ATPase; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-]
Xenobiotic-transporting ATPase n=1 Tax=Niabella soli DSM 19437 RepID=H1NR09_9SPHI rbh
Antibiotic ABC transporter ATPase {ECO:0000313|EMBL:AHF16501.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_2846_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6962..7342
DNA (381bp) protein (127aa)
ribosome-binding factor A n=1 Tax=Niabella aurantiaca RepID=UPI0003660007
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Ribosome-binding factor A; K02834 ribosome-binding factor A
SCNpilot_expt_1000_bf_scaffold_2846_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7382..8605
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NR11_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF16503.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein; K09808 lipoprotein-releasing system permease protein
SCNpilot_expt_1000_bf_scaffold_2846_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8656..9219
DNA (564bp) protein (188aa)
SupH-like sugar phosphatase (EC:3.1.3.23); K07024
Cof-like hydrolase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQL2_9SPHI
HAD family hydrolase {ECO:0000313|EMBL:AHF15918.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_2846_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9495..9881)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQL0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17749.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_2846_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9936..10427)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037AF0AE
Uncharacterized protein {ECO:0000313|EMBL:AHF17748.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2846_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10432..10770)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQK8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17747.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_2846_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10813..11376)
DNA (564bp) protein (188aa)
RNA polymerase sigma-70 factor n=1 Tax=Niabella aurantiaca RepID=UPI0003690008 rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_2846_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11508..12221)
DNA (714bp) protein (238aa)
DNA repair protein RecO n=1 Tax=Niabella soli DSM 19437 RepID=H1NRG9_9SPHI
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA replication and repair protein RecO; K03584 DNA repair protein RecO (recombination protein O)
Displaying 16 items

View Taxonomy