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SCNpilot_expt_1000_bf_scaffold_8858

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8858_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1..666)
DNA (666bp) protein (222aa)
E1-E2 ATPase-associated domain-containing protein; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000373E71D
E1-E2 ATPase-associated domain protein {ECO:0000313|EMBL:ACU58177.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_8858_2
unknown

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comp(796..1308)
DNA (513bp) protein (171aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8858_3
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1395..1865)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Formosa sp. AK20 RepID=M7MII2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:AHM62710.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8858_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1908..2297)
DNA (390bp) protein (130aa)
Globin family protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NKD8_9SPHI
Globin family protein {ECO:0000313|EMBL:AHF16941.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
globin family protein; K06886 hemoglobin
SCNpilot_expt_1000_bf_scaffold_8858_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(2388..3005)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003732046
Crp/Fnr family transcriptional regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_8858_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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3266..3649
DNA (384bp) protein (128aa)
Transcriptional repressor, CopY family n=1 Tax=Niabella soli DSM 19437 RepID=H1NPX7_9SPHI
Transcriptional regulator {ECO:0000313|EMBL:AHF14892.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
CopY family transcriptional repressor; K07737 putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8858_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3652..4899
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037B3368
Uncharacterized protein {ECO:0000313|EMBL:AHF17379.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidase M56 BlaR1
SCNpilot_expt_1000_bf_scaffold_8858_8
unknown

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4860..5267
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037B3368
SCNpilot_expt_1000_bf_scaffold_8858_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5414..5785
DNA (372bp) protein (124aa)
Chaperonin Cpn10 n=1 Tax=Niabella soli DSM 19437 RepID=H1NPX5_9SPHI
Chaperonin {ECO:0000313|EMBL:AHF14893.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
chaperonin Cpn10
SCNpilot_expt_1000_bf_scaffold_8858_10
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5940..6302
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Methanosarcina mazei RepID=Q8PZF7_METMA
Mannose-6-phosphate isomerase
Mannose-6-phosphate isomerase {ECO:0000313|EMBL:AKB63966.1}; TaxID=213585 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei S-6.;"
SCNpilot_expt_1000_bf_scaffold_8858_11
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6305..7387)
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000367F714 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO45621.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8858_12
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(7459..7566)
DNA (108bp) protein (36aa)
Transposase {ECO:0000313|EMBL:KFF30146.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
Displaying 12 items

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