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SCNpilot_expt_1000_bf_scaffold_1132

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1132_1
unknown

Not on your lists

comp(2..445)
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1132_2
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(481..1029)
DNA (549bp) protein (183aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NUZ1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIA94950.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
RNA polymerase sigma-70 factor, Bacteroides expansion family 1
SCNpilot_expt_1000_bf_scaffold_1132_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1217..3238
DNA (2022bp) protein (674aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Niabella aurantiaca RepID=UPI0003772616 rbh
SCNpilot_expt_1000_bf_scaffold_1132_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3306..4931)
DNA (1626bp) protein (542aa)
ABC transporter related protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NMV0_9SPHI rbh
ABC transporter {ECO:0000313|EMBL:AHF14425.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_1132_5
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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5041..6729
DNA (1689bp) protein (563aa)
Putative uncharacterized protein id=1922604 bin=GWE2_Bacteroidetes_41_25 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_41_25 organism_group=Bacteroidetes organism_desc=Good
hypothetical protein
Tax=GWA2_Bacteroidetes_40_15_curated
SCNpilot_expt_1000_bf_scaffold_1132_6
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6795..7091
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036AFD1F
Uncharacterized protein {ECO:0000313|EMBL:KIA86123.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1132_7
unknown

Not on your lists

7313..7666
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1132_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7763..9430
DNA (1668bp) protein (556aa)
Peptidase U62 modulator of DNA gyrase n=1 Tax=Niabella soli DSM 19437 RepID=H1NLY6_9SPHI rbh
Peptidase U62 {ECO:0000313|EMBL:AHF14566.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1132_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9483..11144
DNA (1662bp) protein (554aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NLY7_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF17218.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1132_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11275..11760)
DNA (486bp) protein (162aa)
PUR-alpha/beta/gamma DNA/RNA-binding n=1 Tax=Niabella soli DSM 19437 RepID=H1NLY8_9SPHI
DNA-binding protein {ECO:0000313|EMBL:AHF14565.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PUR-alpha/beta/gamma DNA/RNA-binding protein
SCNpilot_expt_1000_bf_scaffold_1132_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11895..13736)
DNA (1842bp) protein (614aa)
Xenobiotic-transporting ATPase n=1 Tax=Niabella soli DSM 19437 RepID=H1NLY9_9SPHI rbh
ABC transporter {ECO:0000313|EMBL:AHF14564.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
xenobiotic-transporting ATPase; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_1000_bf_scaffold_1132_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13820..15013
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NLZ0_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF14563.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1132_13

Not on your lists

15071..15583
DNA (513bp) protein (171aa)
RNA polymerase ECF-type sigma factor n=1 Tax=gut metagenome RepID=J9G0H1_9ZZZZ
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EJX00732.1}; TaxID=749906 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="gut metagenome.;"
extracytoplasmic function alternative sigma factor
SCNpilot_expt_1000_bf_scaffold_1132_14
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15573..16100
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00034B9555
Uncharacterized protein {ECO:0000313|EMBL:KFF05003.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1132_15
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16113..16622
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI0003641547
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU62889.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_1132_16
unknown

Not on your lists

16646..17152
DNA (507bp) protein (169aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1132_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17284..17970
DNA (687bp) protein (229aa)
ROK family protein; K00886 polyphosphate glucokinase [EC:2.7.1.63]
ROK family protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NR88_9SPHI rbh
Plasmid partitioning protein ParA {ECO:0000313|EMBL:AHF15969.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1132_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18020..18460)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036E5D20
Uncharacterized protein {ECO:0000313|EMBL:AHF17550.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1132_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18628..19446)
DNA (819bp) protein (273aa)
peptidase M48 n=1 Tax=Niabella aurantiaca RepID=UPI0003812E9A rbh
Peptidase M48 {ECO:0000313|EMBL:AHF15348.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidase M48 Ste24p
SCNpilot_expt_1000_bf_scaffold_1132_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19609..20259)
DNA (651bp) protein (217aa)
Glycerol-3-phosphate acyltransferase; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]
acyl-phosphate glycerol 3-phosphate acyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI0003660D19 rbh
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1132_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20339..21145)
DNA (807bp) protein (269aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
(LSU ribosomal protein L11P)-lysine N-methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
Ribosomal protein L11 methyltransferase n=1 Tax=Niabella soli DSM 19437 RepID=H1NN71_9SPHI
SCNpilot_expt_1000_bf_scaffold_1132_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21188..22456)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NN70_9SPHI rbh
Membrane protein {ECO:0000313|EMBL:AHF15351.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
conserved transmembrane protein rbh
SCNpilot_expt_1000_bf_scaffold_1132_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22449..23447)
DNA (999bp) protein (333aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Niabella aurantiaca RepID=UPI000376C0DD rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:AHF14650.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain protein
SCNpilot_expt_1000_bf_scaffold_1132_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23564..24553
DNA (990bp) protein (330aa)
pyruvate dehydrogenase; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
Pyruvate dehydrogenase (Acetyl-transferring) n=1 Tax=Niabella soli DSM 19437 RepID=H1NMP0_9SPHI rbh
Pyruvate dehydrogenase subunit beta {ECO:0000313|EMBL:AHF14648.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1132_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24644..25831
DNA (1188bp) protein (396aa)
Putative two component, sigma54 specific, transcriptional regulator n=1 Tax=Niabella soli DSM 19437 RepID=H1NMP1_9SPHI rbh
Fis family transcriptional regulator {ECO:0000313|EMBL:AHF14647.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
putative two component sigma-54 specific transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1132_26
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25923..26396)
DNA (474bp) protein (158aa)
transketolase n=1 Tax=Niabella aurantiaca RepID=UPI000365DBE8
Transketolase {ECO:0000313|EMBL:AHF15338.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
transketolase
Displaying 26 items

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