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SCNpilot_expt_1000_bf_scaffold_1276

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1276_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

57..824
DNA (768bp) protein (256aa)
cell wall endopeptidase ykfC (EC:3.4.-.-)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003800275 rbh
Hydrolase Nlp/P60 {ECO:0000313|EMBL:AHF15701.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1276_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(827..1615)
DNA (789bp) protein (263aa)
condensin subunit ScpA n=1 Tax=Niabella aurantiaca RepID=UPI00037178E2 rbh
Segregation and condensation protein A {ECO:0000256|SAAS:SAAS00093938}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
chromosome segregation and condensation protein ScpA; K05896 segregation and condensation protein A
SCNpilot_expt_1000_bf_scaffold_1276_3
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1700..2071)
DNA (372bp) protein (124aa)
Large-conductance mechanosensitive channel n=1 Tax=Chryseobacterium sp. CF314 RepID=J2JXV3_9FLAO
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
large conductance mechanosensitive channel protein; K03282 large conductance mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_1276_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2143..2898)
DNA (756bp) protein (252aa)
Polyphosphate:AMP phosphotransferase {ECO:0000313|EMBL:AEW01935.1}; EC=2.7.4.- {ECO:0000313|EMBL:AEW01935.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Polyphosphate:AMP phosphotransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL94_NIAKG
Polyphosphate:AMP phosphotransferase
SCNpilot_expt_1000_bf_scaffold_1276_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2944..3507)
DNA (564bp) protein (188aa)
ribosome recycling factor n=1 Tax=Niabella aurantiaca RepID=UPI000372C9B3
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
ribosome recycling factor; K02838 ribosome recycling factor
SCNpilot_expt_1000_bf_scaffold_1276_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3578..4729)
DNA (1152bp) protein (384aa)
glycosyl transferase n=1 Tax=Niabella aurantiaca RepID=UPI00036BA75A rbh
Glycosyl transferase {ECO:0000313|EMBL:AHF16505.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Glycosyl transferase, family 4, conserved region-containing protein
SCNpilot_expt_1000_bf_scaffold_1276_7
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5040..5756
DNA (717bp) protein (239aa)
transketolase; K00615 transketolase [EC:2.2.1.1]
transketolase n=1 Tax=Niabella aurantiaca RepID=UPI000365132C
Transketolase {ECO:0000313|EMBL:GAO41739.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_expt_1000_bf_scaffold_1276_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5815..7200)
DNA (1386bp) protein (462aa)
Glycine C-acetyltransferase; K00639 glycine C-acetyltransferase [EC:2.3.1.29]
8-amino-7-oxononanoate synthase n=1 Tax=Niabella aurantiaca RepID=UPI00036D827F rbh
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:AHF15588.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1276_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7389..9380)
DNA (1992bp) protein (664aa)
cell division protein FtsZ n=1 Tax=Niabella aurantiaca RepID=UPI0003678170 rbh
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
cell division protein FtsZ; K03531 cell division protein FtsZ
SCNpilot_expt_1000_bf_scaffold_1276_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9427..10776)
DNA (1350bp) protein (450aa)
Cell division protein ftsA n=1 Tax=Niabella soli DSM 19437 RepID=H1NTA3_9SPHI
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
cell division protein FtsA; K03590 cell division protein FtsA
SCNpilot_expt_1000_bf_scaffold_1276_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10867..12258)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NTA2_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF18057.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein; K03589 cell division protein FtsQ
SCNpilot_expt_1000_bf_scaffold_1276_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12287..13675)
DNA (1389bp) protein (463aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
UDP-N-acetylmuramate--L-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
UDP-N-acetylmuramate--alanine ligase n=1 Tax=Niabella aurantiaca RepID=UPI000370A2F5 rbh
SCNpilot_expt_1000_bf_scaffold_1276_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13706..14815)
DNA (1110bp) protein (370aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Niabella soli DSM 19437 RepID=H1NTA0_9SPHI rbh
SCNpilot_expt_1000_bf_scaffold_1276_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14799..16160)
DNA (1362bp) protein (454aa)
cell division protein n=1 Tax=Niabella aurantiaca RepID=UPI00036CCB00 rbh
Cell division protein {ECO:0000313|EMBL:AHF16785.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
cell cycle protein; K03588 cell division protein FtsW
SCNpilot_expt_1000_bf_scaffold_1276_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16167..17570)
DNA (1404bp) protein (468aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Niabella aurantiaca RepID=UPI00036FDCE8 rbh
SCNpilot_expt_1000_bf_scaffold_1276_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17620..18918)
DNA (1299bp) protein (433aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase; K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Niabella aurantiaca RepID=UPI0003790CCD rbh
SCNpilot_expt_1000_bf_scaffold_1276_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18952..20415)
DNA (1464bp) protein (488aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208};
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Niabella aurantiaca RepID=UPI000375867D rbh
SCNpilot_expt_1000_bf_scaffold_1276_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20460..22562)
DNA (2103bp) protein (701aa)
peptidoglycan glycosyltransferase; K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003707614 rbh
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:AHF16781.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1276_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22596..22946)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NT94_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF16780.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1276_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23022..23969)
DNA (948bp) protein (316aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Ribosomal RNA small subunit methyltransferase H; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
16S rRNA methyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI000375D8BD rbh
SCNpilot_expt_1000_bf_scaffold_1276_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23994..24443)
DNA (450bp) protein (150aa)
Protein MraZ n=1 Tax=Niabella soli DSM 19437 RepID=H1NT92_9SPHI
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
MraZ protein; K03925 MraZ protein
SCNpilot_expt_1000_bf_scaffold_1276_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24848..26401
DNA (1554bp) protein (518aa)
carboxyl-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102]
carboxyl-terminal protease n=1 Tax=Niabella aurantiaca RepID=UPI000378A17E rbh
Carboxyl-terminal protease {ECO:0000313|EMBL:AHF14058.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1276_23
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26452..26706
DNA (255bp) protein (85aa)
Putative uncharacterized protein id=4349446 bin=GWC2_Nitrospirae_57_13 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
Tax=GWB2_Bacteroidetes_41_8_curated
SCNpilot_expt_1000_bf_scaffold_1276_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26873..27214
DNA (342bp) protein (114aa)
cystathionine beta-synthase; K01697 cystathionine beta-synthase [EC:4.2.1.22]
Cystathionine beta-synthase n=1 Tax=Niabella soli DSM 19437 RepID=H1NK06_9SPHI
Cystathionine beta-synthase {ECO:0000313|EMBL:AHF14057.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1276_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27211..27693
DNA (483bp) protein (161aa)
cystathionine beta-synthase; K01697 cystathionine beta-synthase [EC:4.2.1.22]
Cystathionine beta-synthase n=1 Tax=Niabella soli DSM 19437 RepID=H1NK06_9SPHI
Cystathionine beta-synthase {ECO:0000313|EMBL:AHF14057.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Displaying 25 items

View Taxonomy