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SCNpilot_expt_1000_bf_scaffold_1290

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1290_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

593..1162
DNA (570bp) protein (190aa)
peptidase A2 n=1 Tax=Niabella aurantiaca RepID=UPI0003774653
Peptidase A2 {ECO:0000313|EMBL:AHF15220.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
protease Do
SCNpilot_expt_1000_bf_scaffold_1290_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1870..2424
DNA (555bp) protein (185aa)
GtrA family protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NJH9_9SPHI
Phenylalanine 4-monooxygenase {ECO:0000313|EMBL:AHF14227.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1290_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2399..2614)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NMQ5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17182.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1290_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2798..3415
DNA (618bp) protein (206aa)
translation initiation factor IF-3 n=1 Tax=Niabella aurantiaca RepID=UPI00036942FC rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
translation initiation factor 3 (bIF-3); K02520 translation initiation factor IF-3
SCNpilot_expt_1000_bf_scaffold_1290_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3608..4129
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NLN6_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF14584.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1290_6
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4220..4690
DNA (471bp) protein (157aa)
GAF domain-containing protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NLN7_9SPHI
Diguanylate cyclase {ECO:0000313|EMBL:KIC93179.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
GAF domain-containing protein GafA; K07170 GAF domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1290_7
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4693..4962
DNA (270bp) protein (90aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7]
Acylphosphatase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PI51_CHIPD
Acylphosphatase {ECO:0000256|SAAS:SAAS00255930}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_1290_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4988..5485)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003722AAA
GNAT family acetyltransferase {ECO:0000313|EMBL:AHF14110.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_1290_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5640..5864
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003755B82
Dodecin {ECO:0000313|EMBL:KIC93780.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein; K09165 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1290_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5882..8161)
DNA (2280bp) protein (760aa)
RNA-binding protein n=1 Tax=Niabella aurantiaca RepID=UPI00036A4139 rbh
RNA-binding protein {ECO:0000313|EMBL:AHF14791.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Tex-like protein; K06959 uncharacterized protein
SCNpilot_expt_1000_bf_scaffold_1290_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8239..9339)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037BBF37 rbh
Sulfite reductase {ECO:0000313|EMBL:AHF14045.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
putative iron-regulated membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_1290_12
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9553..9933
DNA (381bp) protein (127aa)
Uncharacterized protein n=3 Tax=Elizabethkingia RepID=L8K1L3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KHJ38222.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1290_13
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10091..12682
DNA (2592bp) protein (864aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EVM3_EMTOG
Cobalt-zinc-cadmium resistance protein CzcA {ECO:0000313|EMBL:KHJ38223.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
heavy metal efflux pump, CzcA family
SCNpilot_expt_1000_bf_scaffold_1290_14
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12803..13240
DNA (438bp) protein (146aa)
acriflavine resistance protein B n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B555BA
Cobalt-zinc-cadmium resistance protein CzcA {ECO:0000313|EMBL:KHJ38223.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
multidrug resistance protein. AcrB/AcrD/AcrF family protein; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_expt_1000_bf_scaffold_1290_15
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13251..14555
DNA (1305bp) protein (435aa)
acriflavine resistance protein B n=1 Tax=Empedobacter brevis RepID=UPI00035C5C5B
CzcA family heavy metal efflux protein
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:ABQ07463.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
SCNpilot_expt_1000_bf_scaffold_1290_16
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14675..15841
DNA (1167bp) protein (389aa)
hemolysin D n=1 Tax=Empedobacter brevis RepID=UPI00036DCEEB
Nickel and cobalt resistance protein CnrB {ECO:0000313|EMBL:KHJ38224.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_1000_bf_scaffold_1290_17
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15889..16578
DNA (690bp) protein (230aa)
Uncharacterized protein n=3 Tax=Elizabethkingia RepID=L8K5H7_9FLAO rbh
Membrane protein {ECO:0000313|EMBL:AKH93742.1}; TaxID=1352940 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica FMS-007.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1290_18
unknown

Not on your lists

16647..16751
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1290_19

Not on your lists

16723..18084
DNA (1362bp) protein (454aa)
tryptophan synthase subunit beta; K06001 tryptophan synthase beta chain [EC:4.2.1.20] rbh
tryptophan synthase subunit beta n=1 Tax=Echinicola pacifica RepID=UPI00037F5A88 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN38147.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_1290_20
unknown

Not on your lists

18153..18254
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1290_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18353..18883)
DNA (531bp) protein (177aa)
Esterase n=1 Tax=Niabella soli DSM 19437 RepID=H1NJP4_9SPHI
Esterase {ECO:0000313|EMBL:AHF14181.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1290_22
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(18843..19052)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000360CCD9
esterase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_1290_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(19347..21470)
DNA (2124bp) protein (708aa)
30S ribosomal protein S1 n=1 Tax=Niabella aurantiaca RepID=UPI00035E0B97 rbh
30S ribosomal protein S1 {ECO:0000313|EMBL:AHF16977.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
RNA binding S1 domain-containing protein; K02945 small subunit ribosomal protein S1
SCNpilot_expt_1000_bf_scaffold_1290_24
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21728..22726
DNA (999bp) protein (333aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RRF1_LEAB4
phospholipid/glycerol acyltransferase
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:ADQ18484.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCNpilot_expt_1000_bf_scaffold_1290_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22791..23282
DNA (492bp) protein (164aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Niabella soli DSM 19437 RepID=H1NLP6_9SPHI
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
SCNpilot_expt_1000_bf_scaffold_1290_26
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23375..24238
DNA (864bp) protein (288aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Niabella soli DSM 19437 RepID=H1NLP6_9SPHI
tRNA-i(6)A37 thiotransferase enzyme MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
SCNpilot_expt_1000_bf_scaffold_1290_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24369..24611
DNA (243bp) protein (81aa)
Transcriptional regulator n=1 Tax=Niabella soli DSM 19437 RepID=H1NLP7_9SPHI
ATPase AAA {ECO:0000313|EMBL:AHF14576.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Fis family transcriptional regulator
Displaying 27 items

View Taxonomy