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SCNpilot_expt_1000_bf_scaffold_1494

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1494_1
unknown

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3..125
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1494_2
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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144..1211
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0KBR7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH01570.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
SCNpilot_expt_1000_bf_scaffold_1494_3
Flavobacterium branchiophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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1208..1534
DNA (327bp) protein (109aa)
Probable lipoprotein n=1 Tax=Flavobacterium branchiophilum (strain FL-15) RepID=G2Z3E9_FLABF
putative lipoprotein
Probable lipoprotein {ECO:0000313|EMBL:CCB70398.1}; TaxID=1034807 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium branchiophilum (strain FL-15).;"
SCNpilot_expt_1000_bf_scaffold_1494_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1778..2221
DNA (444bp) protein (148aa)
50S ribosomal protein L13 n=1 Tax=Niabella soli DSM 19437 RepID=H1NQV1_9SPHI
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
SCNpilot_expt_1000_bf_scaffold_1494_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


2253..2642
DNA (390bp) protein (130aa)
30S ribosomal protein S9 n=1 Tax=Niabella soli DSM 19437 RepID=H1NQV0_9SPHI
30S ribosomal protein S9 {ECO:0000256|RuleBase:RU003816}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
SCNpilot_expt_1000_bf_scaffold_1494_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


2730..3617
DNA (888bp) protein (296aa)
30S ribosomal protein S2 n=1 Tax=Niabella aurantiaca RepID=UPI00037B2D3F rbh
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
SCNpilot_expt_1000_bf_scaffold_1494_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3713..4549
DNA (837bp) protein (279aa)
Elongation factor Ts n=1 Tax=Niabella soli DSM 19437 RepID=H1NQU8_9SPHI rbh
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
elongation factor Ts; K02357 elongation factor Ts
SCNpilot_expt_1000_bf_scaffold_1494_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4687..6783
DNA (2097bp) protein (699aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA ligase; K01972 DNA ligase (NAD+) [EC:6.5.1.2]
DNA ligase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQX3_9SPHI rbh
SCNpilot_expt_1000_bf_scaffold_1494_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6810..7628)
DNA (819bp) protein (273aa)
sulfate-transporting ATPase; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
Sulfate-transporting ATPase n=1 Tax=Niabella soli DSM 19437 RepID=H1NT07_9SPHI rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHF16093.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1494_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7698..8168)
DNA (471bp) protein (157aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Methylglyoxal synthase n=1 Tax=Niabella soli DSM 19437 RepID=H1NSL4_9SPHI
Methylglyoxal synthase
SCNpilot_expt_1000_bf_scaffold_1494_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8253..9044
DNA (792bp) protein (264aa)
metallophosphoesterase; K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
Metallophosphoesterase n=1 Tax=Niabella soli DSM 19437 RepID=H1NSM6_9SPHI rbh
UDP-2,3-diacylglucosamine hydrolase {ECO:0000313|EMBL:AHF16075.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1494_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9092..9859
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037AD786
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01993.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_1494_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9877..11493
DNA (1617bp) protein (539aa)
Sodium/proton antiporter, CPA1 family n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ53_9SPHI rbh
Sodium:hydrogen antiporter {ECO:0000313|EMBL:AHF16358.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
sodium/proton antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family
SCNpilot_expt_1000_bf_scaffold_1494_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11490..13028)
DNA (1539bp) protein (513aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037D1FF4 rbh
Peptidase M28 {ECO:0000313|EMBL:AHF16530.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidase M28
SCNpilot_expt_1000_bf_scaffold_1494_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13317..13769)
DNA (453bp) protein (151aa)
RpiB/LacA/LacB family sugar-phosphate isomerase; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6]
ribose 5-phosphate isomerase n=1 Tax=Niabella aurantiaca RepID=UPI00037C6E51
Ribose 5-phosphate isomerase {ECO:0000313|EMBL:AHF16529.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1494_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13788..14744)
DNA (957bp) protein (319aa)
Sec-independent protein translocase protein TatC n=1 Tax=Niabella soli DSM 19437 RepID=H1NRB9_9SPHI
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Sec-independent protein translocase TatC; K03118 sec-independent protein translocase protein TatC
SCNpilot_expt_1000_bf_scaffold_1494_17
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(14820..16067)
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Pontibacter sp. BAB1700 RepID=J0LDG6_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:AKD03401.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
RagB/SusD domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1494_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19961..21778)
DNA (1818bp) protein (606aa)
RND transporter n=1 Tax=Niabella aurantiaca RepID=UPI0003758491
RND transporter {ECO:0000313|EMBL:AHF16564.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
RND superfamily exporter
Displaying 18 items

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