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SCNpilot_expt_1000_bf_scaffold_4553

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4553_1
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1..195
DNA (195bp) protein (65aa)
peptidase T2 asparaginase 2; K13051 beta-aspartyl-peptidase (threonine type) [EC:3.4.19.5]
Asparaginase family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHF1_9SPHI
Contig13, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78506.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
SCNpilot_expt_1000_bf_scaffold_4553_2
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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752..1036
DNA (285bp) protein (95aa)
Cyanophycinase {ECO:0000313|EMBL:EEI92206.1}; EC=3.-.-.- {ECO:0000313|EMBL:EEI92206.1};; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
Cyanophycinase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FXZ0_9SPHI
cyanophycinase
SCNpilot_expt_1000_bf_scaffold_4553_3
Winogradskyella psychrotolerans, Winogradskyella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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1064..2191
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Polaribacter franzmannii RepID=UPI00037A41B4
Cell surface protein {ECO:0000313|EMBL:EPR71198.1}; TaxID=641526 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Winogradskyella.;" source="Winogradskyella psychrotolerans RS-3.;"
low-density lipoprotein receptor ywtd repeat-containing protein
SCNpilot_expt_1000_bf_scaffold_4553_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2354..4300
DNA (1947bp) protein (649aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
threonyl-tRNA synthetase n=1 Tax=Niabella aurantiaca RepID=UPI0003651842 rbh
SCNpilot_expt_1000_bf_scaffold_4553_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4652..6580
DNA (1929bp) protein (643aa)
molecular chaperone DnaK n=1 Tax=Niabella aurantiaca RepID=UPI0003678642 rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
chaperone protein dnaK; K04043 molecular chaperone DnaK
SCNpilot_expt_1000_bf_scaffold_4553_6
unknown

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comp(6788..7690)
DNA (903bp) protein (301aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4553_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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7955..8854
DNA (900bp) protein (300aa)
Membrane protein insertase YidC n=1 Tax=Niabella soli DSM 19437 RepID=H1NK39_9SPHI
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
membrane protein OxaA; K03217 preprotein translocase subunit YidC
SCNpilot_expt_1000_bf_scaffold_4553_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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8851..9786
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003811836
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
membrane protein OxaA; K03217 preprotein translocase subunit YidC
SCNpilot_expt_1000_bf_scaffold_4553_9
unknown

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9795..9923
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4553_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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9937..10542
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NNQ8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17487.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4553_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10724..11092)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NT80_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF18051.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_4553_12
unknown

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11333..11395
DNA (63bp) protein (21aa)

This feature has no annotations

Displaying 12 items

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