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SCNpilot_expt_1000_bf_scaffold_16969

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_16969_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1..918
DNA (918bp) protein (306aa)
Hydrogenase expression/formation protein HypE n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLQ0_NIAKG rbh
hydrogenase expression/formation protein HypE; K04655 hydrogenase expression/formation protein HypE rbh
Hydrogenase expression/formation protein HypE {ECO:0000313|EMBL:AEV97642.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_16969_2
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(1090..1653)
DNA (564bp) protein (188aa)
Putative dipeptidase E n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W200_9FLAO
Putative dipeptidase E {ECO:0000313|EMBL:EFK34361.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
Peptidase E
SCNpilot_expt_1000_bf_scaffold_16969_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1956..2378
DNA (423bp) protein (141aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5]
Isoleucine--tRNA ligase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ82_9SPHI
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_1000_bf_scaffold_16969_4].
SCNpilot_expt_1000_bf_scaffold_16969_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2387..4744
DNA (2358bp) protein (786aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5]
isoleucyl-tRNA synthase n=1 Tax=Niabella aurantiaca RepID=UPI00036943E0
SCNpilot_expt_1000_bf_scaffold_16969_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4719..5336
DNA (618bp) protein (206aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5]
isoleucyl-tRNA synthase n=1 Tax=Niabella aurantiaca RepID=UPI00036943E0
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_1000_bf_scaffold_16969_4].
SCNpilot_expt_1000_bf_scaffold_16969_6
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5343..6188
DNA (846bp) protein (282aa)
Transcriptional regulator, TraR/DksA family n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ83_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO41746.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
TraR/DksA family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_16969_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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6300..6776
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ84_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF16384.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_16969_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6785..7111)
DNA (327bp) protein (109aa)
acetyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI00037D6978
Acetyltransferase {ECO:0000313|EMBL:AHF16385.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
N-acetyltransferase GCN5
Displaying 8 items

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