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SCNpilot_expt_1000_bf_scaffold_8886

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8886_1
unknown

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1..174
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8886_2
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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494..1222
DNA (729bp) protein (243aa)
TRAP-type C4-dicarboxylate transport system, periplasmic component n=1 Tax=Polaromonas sp. CF318 RepID=J3D2A0_9BURK
TRAP-type C4-dicarboxylate transport system, periplasmic component {ECO:0000313|EMBL:EJL83249.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_8886_3
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1303..1812
DNA (510bp) protein (170aa)
Candidate small permease component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y3G7_RAMTT
dctM; small permease
Candidate small permease component {ECO:0000313|EMBL:AEG92441.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_1000_bf_scaffold_8886_4
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1805..3100
DNA (1296bp) protein (432aa)
Candidate large permease component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y3G6_RAMTT rbh
dctQ; large permease rbh
Candidate large permease component {ECO:0000313|EMBL:AEG92440.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_1000_bf_scaffold_8886_5
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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3154..3870
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037D88EA
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_expt_1000_bf_scaffold_8886_6
unknown

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comp(3698..4060)
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8886_7
unknown

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comp(4023..4373)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8886_8
unknown

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comp(4318..4536)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8886_9
unknown

Not on your lists

4592..4852
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8886_10
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5175..5945
DNA (771bp) protein (257aa)
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12G26_POLSJ rbh
TRAP dicarboxylate transporter subunit DctP rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_8886_11
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5942..6568
DNA (627bp) protein (209aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CW78_VARPS
tripartite ATP-independent periplasmic transporter DctQ component
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_8886_12
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6565..7857
DNA (1293bp) protein (431aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00036968F1 rbh
TRAP dicarboxylate transporter subunit DctM rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_8886_13
Pandoraea vervacti, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8351..8566)
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Patulibacter americanus RepID=UPI0003B40888
Uncharacterized protein {ECO:0000313|EMBL:AJP57809.1}; TaxID=656178 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea vervacti.;"
SCNpilot_expt_1000_bf_scaffold_8886_14
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8572..9675)
DNA (1104bp) protein (368aa)
NADPH-quinone reductase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B59F01
alcohol dehydrogenase
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ABZ69571.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_8886_15
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9791..10750
DNA (960bp) protein (320aa)
LysR family transcriptional regulator (EC:4.2.1.1)
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACB25730.1}; EC=4.2.1.1 {ECO:0000313|EMBL:ACB25730.1};; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003686B72 rbh
SCNpilot_expt_1000_bf_scaffold_8886_16
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11016..11291)
DNA (276bp) protein (92aa)
XRE family transcriptional regulator id=12550914 bin=BDI species=Rubrivivax benzoatilyticus genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:KJA09020.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8886_17
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11420..11668
DNA (249bp) protein (83aa)
hypothetical protein id=12550915 bin=BDI species=Rubrivivax benzoatilyticus genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:KJA09021.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8886_18
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11661..13118
DNA (1458bp) protein (486aa)
integrase; K14059 integrase id=12550916 bin=BDI species=Acidovorax sp. MR-S7 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
Integrase {ECO:0000313|EMBL:KJA09025.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
integrase; K14059 integrase rbh
SCNpilot_expt_1000_bf_scaffold_8886_19
unknown

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13712..14044
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8886_20
unknown

Not on your lists

14351..14836
DNA (486bp) protein (162aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8886_21
unknown

Not on your lists

14826..14990
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8886_22
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15214..15453)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AL7_POLSJ
hypothetical protein
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_1000_bf_scaffold_8886_23
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15726..15986)
DNA (261bp) protein (87aa)
dnaE; error-prone DNA polymerase DnaE (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7] id=12549753 bin=BDI species=Comamonas testosteroni genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
dnaE; error-prone DNA polymerase DnaE (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying 23 items

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