ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2123

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2123_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1109
DNA (1107bp) protein (369aa)
Isocitrate lyase AceA {ECO:0000313|EMBL:EYR80422.1}; EC=4.1.3.1 {ECO:0000313|EMBL:EYR80422.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
isocitrate lyase (EC:4.1.3.1)
Isocitrate lyase AceA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVG9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2123_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1208..1447
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQS2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80421.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2123_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1503..2375)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036112D5 rbh
LysR family transcriptional regulator rbh
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:AFL48960.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_2123_4
unknown

Not on your lists

2533..2679
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2123_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2726..5248)
DNA (2523bp) protein (841aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037EFBBF rbh
Putative chemoreceptor y4fA {ECO:0000313|EMBL:EYR80418.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chemoreceptor y4fA; K03406 methyl-accepting chemotaxis protein rbh
SCNpilot_expt_1000_bf_scaffold_2123_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5487..5723)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BZZ3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80417.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2123_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5775..6956)
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFG9_9RHIZ rbh
Flavoprotein, HI0933 family {ECO:0000313|EMBL:EYR80416.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
flavoprotein, HI0933 family
SCNpilot_expt_1000_bf_scaffold_2123_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7122..8561
DNA (1440bp) protein (480aa)
Gamma-glutamylputrescine synthetase PuuA {ECO:0000313|EMBL:EYR80415.1}; EC=6.3.1.11 {ECO:0000313|EMBL:EYR80415.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
puuA; gamma-glutamylputrescine synthetase PuuA (EC:6.3.1.11) rbh
Gamma-glutamylputrescine synthetase PuuA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4T2_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2123_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8656..9939
DNA (1284bp) protein (428aa)
Putative oxidoreductase OrdL {ECO:0000313|EMBL:EYR80414.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR80414.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative oxidoreductase OrdL n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F0G3_9RHIZ rbh
ordL; FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2123_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10037..11518
DNA (1482bp) protein (494aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
zwf; hypothetical protein; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49]
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CKB2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2123_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11508..12206
DNA (699bp) protein (233aa)
6-phosphogluconolactonase Pgl {ECO:0000313|EMBL:EYR80412.1}; EC=3.1.1.31 {ECO:0000313|EMBL:EYR80412.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pgl; 6-phosphogluconolactonase (EC:3.1.1.31); K01057 6-phosphogluconolactonase [EC:3.1.1.31]
6-phosphogluconolactonase Pgl n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0B1_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2123_12
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12203..12844)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FNY4_PELBH
Uncharacterized protein {ECO:0000313|EMBL:EAU45919.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2123_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12906..14144
DNA (1239bp) protein (413aa)
Phosphogluconate dehydratase Edd {ECO:0000313|EMBL:EYR80411.1}; EC=4.2.1.12 {ECO:0000313|EMBL:EYR80411.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phosphogluconate dehydratase (EC:4.2.1.12); K01690 phosphogluconate dehydratase [EC:4.2.1.12]
Phosphogluconate dehydratase Edd n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D948_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2123_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14242..14655)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4S7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80410.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2123_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14788..15879)
DNA (1092bp) protein (364aa)
Alpha-glucoside transport ATP-binding protein AglK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F0F8_9RHIZ rbh
Alpha-glucoside transport ATP-binding protein AglK {ECO:0000313|EMBL:EYR80409.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aglK; alpha-glucosides transport system, ATP-binding protein; K10235 alpha-glucoside transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2123_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15947..17605)
DNA (1659bp) protein (553aa)
Putative alpha-glucosidase AglA {ECO:0000313|EMBL:EYR80408.1}; EC=3.2.1.20 {ECO:0000313|EMBL:EYR80408.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aglA; alpha-glucosidase; K01187 alpha-glucosidase [EC:3.2.1.20] rbh
alpha-glucosidase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037B0554 rbh
SCNpilot_expt_1000_bf_scaffold_2123_17
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18252..18878
DNA (627bp) protein (209aa)
Transcriptional regulator RafR, putative n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAC1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL27715.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
transcriptional regulator RafR
SCNpilot_expt_1000_bf_scaffold_2123_18
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18888..19190)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HTT8_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF86869.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_2123_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19208..19489)
DNA (282bp) protein (94aa)
Plasmid maintenance system killer protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W240_RHILT
Plasmid maintenance system killer protein {ECO:0000313|EMBL:EJC79751.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
plasmid maintenance system killer; K07334 proteic killer suppression protein
SCNpilot_expt_1000_bf_scaffold_2123_20
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19557..20756)
DNA (1200bp) protein (400aa)
Alpha-glucoside transport system permease protein AglG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAC0_PELHB rbh
Alpha-glucoside transport system permease protein AglG {ECO:0000313|EMBL:CDP52766.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
alpha-glucoside transport system permease protein AglG; K10234 alpha-glucoside transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2123_21
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20756..20890)
DNA (135bp) protein (45aa)
alpha-glucoside ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030AD139
ABC alpha-glucoside transporter, inner membrane su bunit AglF {ECO:0000313|EMBL:CDP52765.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Displaying 21 items

View Taxonomy