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SCNpilot_expt_1000_bf_scaffold_2427

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2427_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..460
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MFZ0_RHIL3
Putative ATPase {ECO:0000313|EMBL:EYR80053.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K06918
SCNpilot_expt_1000_bf_scaffold_2427_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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457..2202
DNA (1746bp) protein (582aa)
UPF0283 membrane protein SHLA_57c00020 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D847_9RHIZ rbh
UPF0283 membrane protein SHLA_1c002340 {ECO:0000256|HAMAP-Rule:MF_01085}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K08990 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_2427_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2206..2721)
DNA (516bp) protein (172aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK {ECO:0000313|EMBL:EYR80056.1}; EC=2.7.6.3 {ECO:0000313|EMBL:EYR80056.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
folK; putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ89_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2427_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2711..3079)
DNA (369bp) protein (123aa)
Dihydroneopterin aldolase FolB {ECO:0000313|EMBL:EYR80057.1}; EC=4.1.2.25 {ECO:0000313|EMBL:EYR80057.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
folB; dihydroneopterin aldolase (EC:4.1.2.25); K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase FolB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZM3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2427_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3076..3975)
DNA (900bp) protein (300aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
folP; dihydropteroate synthase; K00796 dihydropteroate synthase [EC:2.5.1.15] rbh
Dihydropteroate synthase Sul n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3P7_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2427_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4126..4734
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D852_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80059.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2427_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5185..5505)
DNA (321bp) protein (107aa)
2Fe-2S ferredoxin FdxB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZB9_9RHIZ
2 Fe-2S ferredoxin FdxB {ECO:0000313|EMBL:EYR80060.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ferredoxin; K04755 ferredoxin, 2Fe-2S
SCNpilot_expt_1000_bf_scaffold_2427_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5694..6062)
DNA (369bp) protein (123aa)
HPt domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ95_9RHIZ
HPt domain-containing protein {ECO:0000313|EMBL:EYR80061.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
two-component regulator HPt domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2427_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6435..10934)
DNA (4500bp) protein (1500aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V5U1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CEG07381.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
GE10869 gene product from transcript GE10869-RA
SCNpilot_expt_1000_bf_scaffold_2427_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11807..12124
DNA (318bp) protein (106aa)
Putative kinesin-like protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A716_RHIFH
Apolipoprotein A1/A4/E {ECO:0000313|EMBL:EYR80062.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
kinesin-like protein
Displaying 10 items

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