name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_2863_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..954)
|
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phosphomethylpyrimidine synthase n=1 Tax=Rhizobium giardinii RepID=UPI00036CE791
thiC; thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC
|
|
SCNpilot_expt_1000_bf_scaffold_2863_2
unknown
|
Not on your lists |
1722..1931
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2863_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2127..2900)
|
Putative transmembrane anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBQ4_9RHIZ
rbh
Putative transmembrane anti-sigma factor {ECO:0000313|EMBL:EYR78720.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_2863_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2887..3432)
|
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETG3_9RHIZ
rbh
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EYR78721.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
|
|
SCNpilot_expt_1000_bf_scaffold_2863_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3487..3990)
|
SNARE associated golgi protein-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW37_9RHIZ
SNARE associated golgi protein-like protein {ECO:0000313|EMBL:EYR78722.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2863_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4227..4451)
|
Uncharacterized protein {ECO:0000313|EMBL:EYR78729.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2863_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4565..5284)
|
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LZA1_RHITR
Uncharacterized protein {ECO:0000313|EMBL:EYR78730.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2863_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5281..6471)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D276_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78731.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09136 ribosomal protein S12 methylthiotransferase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2863_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6468..6728)
|
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6AZ86_RHILS
Uncharacterized protein {ECO:0000313|EMBL:EYR78733.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2863_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6759..7112)
|
DNA-binding transcriptional activator of the SARP family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0K455_RHILT
DNA-binding transcriptional regulator SARP family {ECO:0000313|EMBL:EYR78734.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SARP family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_2863_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7157..8548)
|
DNA-binding transcriptional activator of the SARP family n=1 Tax=Rhizobium sp. AP16 RepID=J2WNU1_9RHIZ
DNA-binding transcriptional regulator SARP family {ECO:0000313|EMBL:EYR78734.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2863_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8555..8998)
|
Putative transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXZ1_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:EYR78735.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transcription regulator, XRE family
|
|
SCNpilot_expt_1000_bf_scaffold_2863_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9140..9901)
|
ABC transporter-like protein; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
rbh
L-cystine import ATP-binding protein TcyC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDG9_9RHIZ
rbh
ABC-type polar amino acid transport system ATPase component {ECO:0000313|EMBL:EYR78736.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2863_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9898..10578)
|
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMU6_9RHIZ
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR78737.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inner membrane amino-acid ABC transporter permease protein; K10009 cystine transport system permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_2863_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10681..11454)
|
L-cystine-binding protein TcyA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CI08_9RHIZ
rbh
Amino acid ABC transporter substrate-binding protein, PAAT family {ECO:0000313|EMBL:EYR78738.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amino acid ABC transporter substrate-binding protein; K02424 cystine transport system substrate-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_2863_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11732..13231
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000367E487
ABC-type oligopeptide transport system periplasmic component {ECO:0000313|EMBL:EYR78739.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oppA1; periplasmic oligopeptide-binding protein OppA
|
|
SCNpilot_expt_1000_bf_scaffold_2863_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13291..14214
|
Oligopeptide transport system permease protein OppB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7W7_9RHIZ
rbh
Oligopeptide ABC transport system permease protein OppB {ECO:0000313|EMBL:EYR78740.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
permease protein oppB; K15581 oligopeptide transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2863_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14207..15337
|
Oligopeptide transport system permease protein OppC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQQ7_9RHIZ
rbh
Oligopeptide ABC transport system permease protein OppC {ECO:0000313|EMBL:EYR78741.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oppC; oligopeptide transport system permease OppC; K15582 oligopeptide transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2863_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15339..16529
|
peptide ABC transporter ATPase n=1 Tax=Rhizobium meliloti RepID=UPI00037CA60F
ABC-type transport system, duplicated ATPase component {ECO:0000313|EMBL:EYR78742.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC-type uncharacterized transport system, duplicated ATPase component
|
|
SCNpilot_expt_1000_bf_scaffold_2863_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16495..16929
|
Uncharacterized ABC transporter ATP-binding protein yejF n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AGE9_RHIFH
ABC-type transport system, duplicated ATPase component {ECO:0000313|EMBL:EYR78742.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oppd1; ABC transporter ATP-binding protein yejF
|
|
SCNpilot_expt_1000_bf_scaffold_2863_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16951..18078
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRX9_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78743.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|