ggKbase home page

SCNpilot_expt_1000_bf_scaffold_8066

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8066_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..468)
DNA (468bp) protein (156aa)
Threonine-phosphate decarboxylase CobC {ECO:0000313|EMBL:EYR80640.1}; EC=4.1.1.81 {ECO:0000313|EMBL:EYR80640.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Threonine-phosphate decarboxylase CobC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQV4_9RHIZ
cobC; cobalamin biosynthetic protein; K02225 cobalamin biosynthetic protein CobC
SCNpilot_expt_1000_bf_scaffold_8066_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(560..1867)
DNA (1308bp) protein (436aa)
Hydrogenobyrinate a,c-diamide synthase {ECO:0000256|HAMAP-Rule:MF_00027}; EC=6.3.5.9 {ECO:0000256|HAMAP-Rule:MF_00027};; Hydrogenobyrinic acid a,c-diamide synthase {ECO:0000256|HAMAP-Rule:MF_00027}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Cobyrinic acid A,C-diamide synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVJ6_9RHIZ rbh
cobB; cobyrinic acid A,C-diamide synthase rbh
SCNpilot_expt_1000_bf_scaffold_8066_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1864..2283)
DNA (420bp) protein (140aa)
Uroporphyrinogen-III C-methyltransferase CobA {ECO:0000313|EMBL:EYR80638.1}; EC=2.1.1.107 {ECO:0000313|EMBL:EYR80638.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Uroporphyrinogen-III C-methyltransferase CobA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLD9_9RHIZ
cobA; uroporphyrin-III C-methyltransferase
SCNpilot_expt_1000_bf_scaffold_8066_4
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2345..2773
DNA (429bp) protein (143aa)
Tax=RBG_16_Deltaproteobacteria_71_12_curated
SCNpilot_expt_1000_bf_scaffold_8066_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2698..3186)
DNA (489bp) protein (163aa)
cobE; cobalamin biosynthesis protein; K05934 precorrin-3B C17-methyltransferase [EC:2.1.1.131]
Protein CobE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5N4_9RHIZ
Cobalamin biosynthesis protein CbiG {ECO:0000313|EMBL:EYR80637.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_8066_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3358..4266
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQW1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80635.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8066_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4238..4879)
DNA (642bp) protein (214aa)
Cob(I)yrinic acid a,c-diamide adenosyltransferase CobO {ECO:0000313|EMBL:EYR80634.1}; EC=2.5.1.17 {ECO:0000313|EMBL:EYR80634.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
Cob(I)yrinic acid a,c-diamide adenosyltransferase CobO n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVK2_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_8066_8
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4895..5245)
DNA (351bp) protein (117aa)
Glutathione-dependent formaldehyde-activating GFA n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F5S0_9RHIZ
Glutathione-dependent formaldehyde-activating GFA {ECO:0000313|EMBL:EHS51913.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8066_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5245..9138)
DNA (3894bp) protein (1298aa)
Aerobic cobaltochelatase subunit CobN {ECO:0000313|EMBL:EYR80633.1}; EC=6.6.1.2 {ECO:0000313|EMBL:EYR80633.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cobN; cobaltochelatase subunit CobN; K02230 cobaltochelatase CobN [EC:6.6.1.2] rbh
Cobaltochelatase, CobN subunit n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZSH4_RHILW rbh
SCNpilot_expt_1000_bf_scaffold_8066_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9364..10245)
DNA (882bp) protein (294aa)
Protein CobW n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CP29_9RHIZ
Cobalamin biosynthesis protein CobW {ECO:0000313|EMBL:EYR80632.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cobW; Protein cobW; K02234 cobalamin biosynthesis protein CobW
Displaying 10 items

View Taxonomy