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SCNpilot_expt_1000_bf_scaffold_8750

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8750_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..465
DNA (465bp) protein (155aa)
Chaperone protein DnaK n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XF56_RHIFR
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dnaK; chaperone protein DnaK
SCNpilot_expt_1000_bf_scaffold_8750_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

695..1828
DNA (1134bp) protein (378aa)
Chaperone protein DnaJ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETY1_9RHIZ rbh
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dnaJ; molecular chaperone DnaJ; K03686 molecular chaperone DnaJ rbh
SCNpilot_expt_1000_bf_scaffold_8750_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2052..3320)
DNA (1269bp) protein (423aa)
Putative hydroxypyruvate reductase TtuD {ECO:0000313|EMBL:EYR82258.1}; EC=1.1.1.81 {ECO:0000313|EMBL:EYR82258.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative hydroxypyruvate reductase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U4U0_9RHIZ
putative hydroxypyruvate reductase rbh
SCNpilot_expt_1000_bf_scaffold_8750_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3481..3960)
DNA (480bp) protein (160aa)
2-hydroxy-3-oxopropionate reductase GlxR {ECO:0000313|EMBL:EYR82259.1}; EC=1.1.1.60 {ECO:0000313|EMBL:EYR82259.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
2-hydroxy-3-oxopropionate reductase GlxR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIB9_9RHIZ
2-hydroxy-3-oxopropionate reductase
SCNpilot_expt_1000_bf_scaffold_8750_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4410..5189)
DNA (780bp) protein (260aa)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Hydroxypyruvate isomerase Hyi n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C2S6_9RHIZ rbh
hyi; hydroxypyruvate isomerase
SCNpilot_expt_1000_bf_scaffold_8750_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5260..6648)
DNA (1389bp) protein (463aa)
Glyoxylate carboligase Gcl {ECO:0000313|EMBL:EYR82261.1}; EC=4.1.1.47 {ECO:0000313|EMBL:EYR82261.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glyoxylate carboligase (EC:4.1.1.47); K01608 tartronate-semialdehyde synthase [EC:4.1.1.47]
Glyoxylate carboligase Gcl n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EKF9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_8750_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7185..8006
DNA (822bp) protein (274aa)
Acetate operon repressor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8J1_9RHIZ rbh
Acetate operon repressor {ECO:0000313|EMBL:EYR82262.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetate operon repressor rbh
SCNpilot_expt_1000_bf_scaffold_8750_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8190..9527)
DNA (1338bp) protein (446aa)
Guanine deaminase GuaD {ECO:0000313|EMBL:EYR82264.1}; EC=3.5.4.3 {ECO:0000313|EMBL:EYR82264.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Guanine deaminase GuaD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTV5_9RHIZ rbh
guaD2; guanine deaminase
SCNpilot_expt_1000_bf_scaffold_8750_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9524..10765)
DNA (1242bp) protein (414aa)
Cytochrome c heme-binding site n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LTT2_RHITR rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR82265.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytochrome c heme-binding site rbh
SCNpilot_expt_1000_bf_scaffold_8750_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11241..11816
DNA (576bp) protein (192aa)
Transcriptional regulator, LysR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSA8_RHITR
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGB74102.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_8750_11
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11753..12610)
DNA (858bp) protein (286aa)
Xanthine dehydrogenase accessory protein XdhC Genetic Information Processing n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U4V8_9RHIZ
Xanthine dehydrogenase accessory protein XdhC Genetic Information Processing {ECO:0000313|EMBL:ENN85358.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
xdhC; xanthine dehydrogenase accessory protein XdhC
SCNpilot_expt_1000_bf_scaffold_8750_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12616..14688)
DNA (2073bp) protein (691aa)
Xanthine dehydrogenase molybdenum-binding subunit {ECO:0000313|EMBL:EYR82270.1}; EC=1.17.1.4 {ECO:0000313|EMBL:EYR82270.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Xanthine dehydrogenase molybdenum-binding subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CB02_9RHIZ
xdhB2; xanthine dehydrogenase, molybdopterin binding subunit
SCNpilot_expt_1000_bf_scaffold_8750_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14940..15383)
DNA (444bp) protein (148aa)
Putative xanthine dehydrogenase subunit E {ECO:0000313|EMBL:EYR82271.1}; EC=1.17.1.4 {ECO:0000313|EMBL:EYR82271.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative xanthine dehydrogenase subunit E n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESU2_9RHIZ
xdhA2; xanthine dehydrogenase, small subunit
Displaying 13 items

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