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SCNpilot_expt_1000_bf_scaffold_8907

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8907_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5..493)
DNA (489bp) protein (163aa)
Energy-coupling factor transporter transmembrane protein BioN n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBW9_9RHIZ
Energy-coupling factor transporter transmembrane protein BioN {ECO:0000313|EMBL:EYR83109.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ABC transporter transmembrane component; K02008 cobalt/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_8907_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(594..1235)
DNA (642bp) protein (214aa)
Biotin transport ATP-binding protein BioM {ECO:0000313|EMBL:EYR83108.1}; EC=3.6.3.- {ECO:0000313|EMBL:EYR83108.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Biotin transport ATP-binding protein BioM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRT0_9RHIZ rbh
bioM; putative biotin transporter, ATP binding protein BioM; K02006 cobalt/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_8907_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1312..2571
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0U9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83107.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_8907_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2773..3873)
DNA (1101bp) protein (367aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] rbh
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETM1_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_8907_5
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3900..4997)
DNA (1098bp) protein (366aa)
aroC; chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] rbh
Chorismate synthase {ECO:0000255|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000255|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000255|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000255|HAMAP-Rule:MF_00300}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
Chorismate synthase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=AROC_RHISN rbh
SCNpilot_expt_1000_bf_scaffold_8907_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5033..8587)
DNA (3555bp) protein (1185aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D953_9RHIZ rbh
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor {ECO:0000313|EMBL:EYR79542.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GGDEF/EAL transmembrane sensory box protein
SCNpilot_expt_1000_bf_scaffold_8907_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8862..9122
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0B6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79543.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8907_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9150..9719)
DNA (570bp) protein (190aa)
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Phosphoglycerate mutase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CKB6_9RHIZ rbh
Phosphoglycerate mutase {ECO:0000313|EMBL:EYR79544.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_8907_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9716..10567)
DNA (852bp) protein (284aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fabI; enoyl-(acyl carrier protein) reductase (EC:1.3.1.10); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F0G8_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_8907_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10700..11740)
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003752DE2 rbh
Chaperone protein DnaJ {ECO:0000313|EMBL:EYR79546.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chaperone protein rbh
SCNpilot_expt_1000_bf_scaffold_8907_11
unknown

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comp(11843..11914)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 11 items

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