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SCNpilot_expt_1000_bf_scaffold_1900

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Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1900_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1868)
DNA (1866bp) protein (622aa)
LysM protein LysM {ECO:0000313|EMBL:EYR78050.1}; EC=6.1.1.15 {ECO:0000313|EMBL:EYR78050.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000362B415 rbh
peptidoglycan-binding lysin domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1900_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2134..2649
DNA (516bp) protein (172aa)
LOG family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXE7_9RHIZ rbh
LOG family protein {ECO:0000313|EMBL:EYR78049.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K06966
SCNpilot_expt_1000_bf_scaffold_1900_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2694..3638)
DNA (945bp) protein (315aa)
Protein RarD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWA7_9RHIZ rbh
Protein RarD {ECO:0000313|EMBL:EYR78047.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1900_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3747..3941)
DNA (195bp) protein (65aa)
Putative AIPM/hcit synthase family transferase {ECO:0000313|EMBL:EYR78046.1}; EC=2.3.3.- {ECO:0000313|EMBL:EYR78046.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AIPM/hcit synthase family transferase (EC:2.3.3.-)
Putative AIPM/hcit synthase family transferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D587_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1900_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4154..4888
DNA (735bp) protein (245aa)
Uncharacterized protein {ECO:0000313|EMBL:CEG08372.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_1900_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4789..5331)
DNA (543bp) protein (181aa)
Putative AIPM/hcit synthase family transferase {ECO:0000313|EMBL:EYR78046.1}; EC=2.3.3.- {ECO:0000313|EMBL:EYR78046.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
leua1; 2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13]
Putative AIPM/hcit synthase family transferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D587_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1900_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5438..5995)
DNA (558bp) protein (186aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pip; proline iminopeptidase Pip (EC:3.4.11.5)
Proline iminopeptidase Pip n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0J6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1900_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6357..6839)
DNA (483bp) protein (161aa)
Putative glutathione-dependent formaldehyde-activating protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXE3_9RHIZ rbh
Putative glutathione-dependent formaldehyde-activating protein {ECO:0000313|EMBL:EYR78044.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_1000_bf_scaffold_1900_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6851..6970)
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG85_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78043.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1900_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6967..7464)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWA3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78042.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_1000_bf_scaffold_1900_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7461..7943)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D580_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78041.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7940..9286)
DNA (1347bp) protein (449aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0J0_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_1900_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9795..9977
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG82_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78038.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1900_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9982..10755)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW98_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78037.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10816..11250
DNA (435bp) protein (145aa)
Putative NUDIX family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D575_9RHIZ
Putative NUDIX family protein {ECO:0000313|EMBL:EYR78036.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_1900_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11247..11672
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0I7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78035.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11777..12034
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036A7DB8
Uncharacterized protein {ECO:0000313|EMBL:EYR78034.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12051..12818
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMK4_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78033.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_19
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12805..13425)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036E09D8
Uncharacterized protein {ECO:0000313|EMBL:EJL52418.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13596..14441
DNA (846bp) protein (282aa)
Folate-binding protein YgfZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFQ5_9RHIZ rbh
Folate-binding protein YgfZ {ECO:0000313|EMBL:EYR78030.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aminomethyltransferase (glycine cleavage); K06980
SCNpilot_expt_1000_bf_scaffold_1900_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14438..15067
DNA (630bp) protein (210aa)
hydrolase n=1 Tax=Rhizobium meliloti RepID=UPI00030F7F20
Putative hydrolases of HD superfamily {ECO:0000313|EMBL:EYR78029.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K06952
SCNpilot_expt_1000_bf_scaffold_1900_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15070..15603
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWT7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78028.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15600..16577
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A309_RHIFH rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78027.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1900_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16591..17112)
DNA (522bp) protein (174aa)
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sodC; superoxide dismutase (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1]
Superoxide dismutase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZF7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1900_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17179..18084)
DNA (906bp) protein (302aa)
Putative nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:EYR78024.1}; EC=2.4.2.19 {ECO:0000313|EMBL:EYR78024.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nadC; nicotinate-mononucleotide pyrophosphorylase; K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] rbh
Putative nicotinate-nucleotide pyrophosphorylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ16_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_1900_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18124..19722)
DNA (1599bp) protein (533aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nadB; L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16] rbh
aspartate oxidase n=1 Tax=Rhizobium giardinii RepID=UPI0003767F07 rbh
SCNpilot_expt_1000_bf_scaffold_1900_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19900..20979)
DNA (1080bp) protein (360aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nadA; quinolinate synthetase A; K03517 quinolinate synthase [EC:2.5.1.72] rbh
quinolinate synthetase n=1 Tax=Rhizobium giardinii RepID=UPI00037D5029 rbh
SCNpilot_expt_1000_bf_scaffold_1900_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21151..22377)
DNA (1227bp) protein (409aa)
MFS permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX20_9RHIZ rbh
MFS permease {ECO:0000313|EMBL:EYR84342.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
probabable MFS permease rbh
SCNpilot_expt_1000_bf_scaffold_1900_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22680..23672
DNA (993bp) protein (331aa)
Magnesium transport protein CorA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5Y6_9RHIZ rbh
Magnesium transport protein CorA {ECO:0000313|EMBL:EYR84341.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
SCNpilot_expt_1000_bf_scaffold_1900_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23692..24537)
DNA (846bp) protein (282aa)
Fe-S protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXY3_9RHIZ rbh
Fe-S protein {ECO:0000313|EMBL:EYR84339.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative Fe-S protein rbh
Displaying items 1-30 of 48 in total

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