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SCNpilot_expt_1000_bf_scaffold_10366

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10366_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(225..461)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXI1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83547.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10366_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(624..938)
DNA (315bp) protein (105aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase PanB {ECO:0000313|EMBL:EYR83548.1}; EC=2.1.2.11 {ECO:0000313|EMBL:EYR83548.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase PanB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGC7_9RHIZ
ketopantoate hydroxymethyltransferase
SCNpilot_expt_1000_bf_scaffold_10366_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1430..2650)
DNA (1221bp) protein (407aa)
Anthranilate 1,2-dioxygenase system ferredoxin--NAD(+) reductase component {ECO:0000313|EMBL:EYR83549.1}; EC=1.18.1.3 {ECO:0000313|EMBL:EYR83549.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ferredoxin--NAD(+) reductase (EC:1.18.1.3) rbh
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035E4793 rbh
SCNpilot_expt_1000_bf_scaffold_10366_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2728..2871)
DNA (144bp) protein (48aa)
Rieske (2Fe-2S) domain-containing protein, MocE subfamily n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D037_9RHIZ
Rieske (2Fe-2S) domain-containing protein, MocE subfamily {ECO:0000313|EMBL:EYR83550.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Rieske (2Fe-2S) domain protein, MocE subfamily; K05710 dioxygenase ferredoxin subunit
SCNpilot_expt_1000_bf_scaffold_10366_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3008..4093)
DNA (1086bp) protein (362aa)
Fatty acid desaturase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CK24_9RHIZ rbh
Fatty acid desaturase {ECO:0000313|EMBL:EYR83551.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fatty acid desaturase rbh
SCNpilot_expt_1000_bf_scaffold_10366_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4236..5267
DNA (1032bp) protein (344aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F077_9RHIZ rbh
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EYR83552.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator LacI family; K02529 LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_10366_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5431..6072
DNA (642bp) protein (214aa)
Xylose isomerase domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4H2_9RHIZ
Xylose isomerase domain-containing protein {ECO:0000313|EMBL:EYR83553.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytoplasmic protein
SCNpilot_expt_1000_bf_scaffold_10366_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6023..6214
DNA (192bp) protein (64aa)
Xylose isomerase domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4H2_9RHIZ
Xylose isomerase domain-containing protein {ECO:0000313|EMBL:EYR83553.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative amino acid isomerase
SCNpilot_expt_1000_bf_scaffold_10366_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6635..7564
DNA (930bp) protein (310aa)
Putative rhizopine-binding protein MocB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8U9_9RHIZ rbh
Putative rhizopine-binding protein MocB {ECO:0000313|EMBL:EYR83554.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
periplasmic binding protein/LacI transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_10366_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7668..9206
DNA (1539bp) protein (513aa)
Monosaccharide-transporting ATPase {ECO:0000256|SAAS:SAAS00041637}; EC=3.6.3.17 {ECO:0000256|SAAS:SAAS00041637};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ribose/galactose/methyl galactoside import ATP-binding protein 2 (EC:3.6.3.17) rbh
Putative ribose/galactose/methyl galactoside import ATP-binding protein 2 n=2 Tax=Rhizobium meliloti RepID=K0P7K1_RHIML rbh
SCNpilot_expt_1000_bf_scaffold_10366_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9243..9485
DNA (243bp) protein (81aa)
Galactoside transport system permease protein MglC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EW03_9RHIZ
Galactoside transport system permease protein MglC {ECO:0000313|EMBL:EYR80950.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar ABC transporter permease; K02057 simple sugar transport system permease protein
Displaying 11 items

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