ggKbase home page

SCNpilot_expt_1000_bf_scaffold_10459

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10459_1
unknown

Not on your lists

comp(3..134)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10459_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

588..803
DNA (216bp) protein (72aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJN5_9SPHN
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAD48670.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
antibiotic transport system ATP-binding protein; K09687 antibiotic transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_10459_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

800..2362
DNA (1563bp) protein (521aa)
L-aspartate oxidase {ECO:0000313|EMBL:AKH43067.1}; EC=1.4.3.16 {ECO:0000313|EMBL:AKH43067.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16] rbh
L-aspartate oxidase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y688_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_10459_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2488..2784
DNA (297bp) protein (99aa)
UPI0003CFA757 related cluster n=1 Tax=unknown RepID=UPI0003CFA757
GIY-YIG nuclease superfamily protein {ECO:0000313|EMBL:AKH44220.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
tRNA/rRNA methyltransferase
SCNpilot_expt_1000_bf_scaffold_10459_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3311..5311
DNA (2001bp) protein (667aa)
Ribonucleoside-diphosphate reductase NrdZ {ECO:0000313|EMBL:AKH43064.1}; EC=1.17.4.1 {ECO:0000313|EMBL:AKH43064.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] rbh
Ribonucleoside-diphosphate reductase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N7C2_ERYLH rbh
SCNpilot_expt_1000_bf_scaffold_10459_6
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5337..6038
DNA (702bp) protein (234aa)
O-methyltransferase (EC:2.1.1.-)
O-methyltransferase {ECO:0000313|EMBL:AGT09290.1}; EC=2.1.1.- {ECO:0000313|EMBL:AGT09290.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00035EA247
SCNpilot_expt_1000_bf_scaffold_10459_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6084..6368
DNA (285bp) protein (95aa)
Uncharacterized protein {ECO:0000313|EMBL:AKH43062.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_10459_8
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6565..7251
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003717BC7
Bradyrhizobium elkanii strain UASWS1015 Contig184, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45300.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
S-adenosyl-L-methionine (SAM)-methyltransferases
SCNpilot_expt_1000_bf_scaffold_10459_9
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7299..7517)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CCN8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ81220.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10459_10
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7622..8161)
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7G7W7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KEO88742.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10459_11
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8178..8828)
DNA (651bp) protein (217aa)
cdsA2; phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
phosphatidate cytidylyltransferase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003828D95
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:KEO88741.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
SCNpilot_expt_1000_bf_scaffold_10459_12
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9129..9674)
DNA (546bp) protein (182aa)
Putative acyltransferase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMX4_RUBGI
Acyltransferase {ECO:0000313|EMBL:KEO88740.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
putative acyltransferase
SCNpilot_expt_1000_bf_scaffold_10459_13
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9671..10294)
DNA (624bp) protein (208aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQB1_PSEUU
Uncharacterized protein {ECO:0000313|EMBL:KEO88739.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
CDP-alcohol phosphatidyltransferase
SCNpilot_expt_1000_bf_scaffold_10459_14
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10506..11030
DNA (525bp) protein (175aa)
nrdF; ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4X8_9SPHN
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
Displaying 14 items

View Taxonomy