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SCNpilot_expt_1000_bf_scaffold_10460

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10460_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..157)
DNA (156bp) protein (52aa)
Soluble lytic transglycosylase {ECO:0000313|EMBL:EYR84312.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_10460_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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481..1365
DNA (885bp) protein (295aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] rbh
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUH0_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_10460_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1367..1846
DNA (480bp) protein (160aa)
SsrA-binding protein SmpB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ29_9RHIZ rbh
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
smpB; SsrA-binding protein SmpB
SCNpilot_expt_1000_bf_scaffold_10460_4
bacterium YEK0313, Bacteria

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2319..2687
DNA (369bp) protein (123aa)
Transposase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K473_9SPHN
Transposase DDE domain protein {ECO:0000313|EMBL:CEJ15827.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
transposase, IS4
SCNpilot_expt_1000_bf_scaffold_10460_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2775..3251)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPZ5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84315.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_10460_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3386..4021)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HLZ8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84316.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10460_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4430..4831
DNA (402bp) protein (134aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Rhizobium giardinii RepID=UPI000379FB4B
DNA-directed RNA polymerase subunit omega
SCNpilot_expt_1000_bf_scaffold_10460_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5785..7128
DNA (1344bp) protein (448aa)
GTP pyrophosphokinase Rsh {ECO:0000313|EMBL:EYR84318.1}; EC=2.7.6.5 {ECO:0000313|EMBL:EYR84318.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rsh; GTP pyrophosphokinase Rsh (EC:2.7.6.5)
GTP pyrophosphokinase Rsh n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ET62_9RHIZ
Displaying 8 items

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