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SCNpilot_expt_1000_bf_scaffold_11016

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11016_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..851)
DNA (849bp) protein (283aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative tRNA-dihydrouridine synthase Dus n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXB3_9RHIZ rbh
nifR; tRNA-dihydrouridine synthase
SCNpilot_expt_1000_bf_scaffold_11016_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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997..2208
DNA (1212bp) protein (404aa)
ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:2.7.7.60)
Bifunctional enzyme IspD/IspF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0F8_9RHIZ rbh
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_11016_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2205..2705
DNA (501bp) protein (167aa)
Nicotinamide-nucleotide amidohydrolase PncC {ECO:0000313|EMBL:EYR80035.1}; EC=3.5.1.42 {ECO:0000313|EMBL:EYR80035.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Nicotinamide-nucleotide amidohydrolase PncC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D546_9RHIZ
cinA; putative competence-damage inducible protein; K03743
SCNpilot_expt_1000_bf_scaffold_11016_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2694..3155)
DNA (462bp) protein (154aa)
Oligoketide cyclase/lipid transport protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG55_9RHIZ
Oligoketide cyclase/lipid transport protein {ECO:0000313|EMBL:EYR80037.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative cyclase/dehydrase
SCNpilot_expt_1000_bf_scaffold_11016_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3165..3734)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXB7_9RHIZ
Adenylate kinase {ECO:0000313|EMBL:EYR80038.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11016_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3806..4783)
DNA (978bp) protein (326aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lipA; lipoic acid synthetase (EC:2.8.1.-); K03644 lipoic acid synthetase [EC:2.8.1.8]
Lipoyl synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D550_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_11016_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4984..6543)
DNA (1560bp) protein (520aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lpdA; dihydrolipoyl dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase LpdA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW74_9RHIZ
SCNpilot_expt_1000_bf_scaffold_11016_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6491..6751)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG59_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80042.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09794 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11016_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6819..7460)
DNA (642bp) protein (214aa)
Arylesterase {ECO:0000313|EMBL:EYR80043.1}; EC=3.1.1.2 {ECO:0000313|EMBL:EYR80043.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
arylesterase (EC:3.1.1.2)
Arylesterase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXC0_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_11016_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7476..8165)
DNA (690bp) protein (230aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JW79_AGRVS
Displaying 10 items

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