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SCNpilot_expt_1000_bf_scaffold_11319

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11319_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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414..1448
DNA (1035bp) protein (345aa)
Putative metalloendopeptidase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT86_9RHIZ rbh
Putative metalloendopeptidase protein {ECO:0000313|EMBL:EYR81976.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
peptidase M23
SCNpilot_expt_1000_bf_scaffold_11319_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1438..2760
DNA (1323bp) protein (441aa)
Carboxy-terminal-processing protease CtpA {ECO:0000313|EMBL:EYR81977.1}; EC=3.4.21.102 {ECO:0000313|EMBL:EYR81977.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ctpA; carboxyl-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] rbh
Carboxy-terminal-processing protease CtpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDC9_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_11319_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3063..4010
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EF66_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78915.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11319_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4020..4547
DNA (528bp) protein (176aa)
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Dinucleoside polyphosphate hydrolase; K08311 putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] rbh
RNA pyrophosphohydrolase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXB3_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_11319_5
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4773..5207)
DNA (435bp) protein (145aa)
transposase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037CC607
putative transposase for insertion sequence NGRIS-12c
Putative transposase for insertion sequence NGRIS-12a {ECO:0000313|EMBL:ACP24137.1}; Putative transposase for insertion sequence NGRIS-12c {ECO:0000313|EMBL:ACP25564.1}; Putative transposase for insertion sequence NGRIS-12d {ECO:0000313|EMBL:ACP25168.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_11319_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5374..5859)
DNA (486bp) protein (162aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Bacterioferritin n=7 Tax=Rhizobium meliloti RepID=F6BSN8_SINMB rbh
bacterioferritin; K03594 bacterioferritin rbh
SCNpilot_expt_1000_bf_scaffold_11319_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5825..6136)
DNA (312bp) protein (104aa)
Uncharacterized protein n=8 Tax=Rhizobium meliloti RepID=F7X0J5_SINMM
BFD-like [2Fe-2S] binding protein {ECO:0000313|EMBL:EYR78918.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11319_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6546..6971
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F097_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78919.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying 8 items

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