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SCNpilot_expt_1000_bf_scaffold_11803

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11803_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..889)
DNA (888bp) protein (296aa)
Putative diguanylate cyclase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2J3_9RHIZ
Putative diguanylate cyclase {ECO:0000313|EMBL:EYR79231.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain
SCNpilot_expt_1000_bf_scaffold_11803_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(944..1537)
DNA (594bp) protein (198aa)
Ribosomal-protein-alanine acetyltransferase RimJ {ECO:0000313|EMBL:EYR79230.1}; EC=2.3.1.128 {ECO:0000313|EMBL:EYR79230.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-acetyltransferase GCN5; K03790 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128] rbh
Ribosomal-protein-alanine acetyltransferase RimJ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYP0_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_11803_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1720..1869)
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CI37_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79229.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_11803_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1996..2349)
DNA (354bp) protein (118aa)
Cupin domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY86_9RHIZ
Cupin domain-containing protein {ECO:0000313|EMBL:EYR79228.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cupin
SCNpilot_expt_1000_bf_scaffold_11803_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2459..3199)
DNA (741bp) protein (247aa)
Processing protease protein {ECO:0000313|EMBL:EYR79225.1}; EC=3.4.-.- {ECO:0000313|EMBL:EYR79225.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
zinc protease (EC:3.4.24.-)
Processing protease protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYN5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_11803_6
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

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3390..3653
DNA (264bp) protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY13570.1}; Flags: Fragment;; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_expt_1000_bf_scaffold_11803_7
unknown

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3622..3807
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11803_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3776..4960)
DNA (1185bp) protein (395aa)
Threonine synthase ThrC {ECO:0000313|EMBL:EYR79224.1}; EC=4.2.3.1 {ECO:0000313|EMBL:EYR79224.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thrC; threonine synthase; K01733 threonine synthase [EC:4.2.3.1]
Threonine synthase ThrC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CI33_9RHIZ
Displaying 8 items

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