name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_3001_1
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1..417
|
Protein-(Glutamine-N5) methyltransferase, ribosomal protein L3-specific {ECO:0000313|EMBL:EUB96976.1}; EC=2.1.1.72 {ECO:0000313|EMBL:EUB96976.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
prmB; N5-glutamine methyltransferase; K07320 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72]
50S ribosomal protein L3 glutamine methyltransferase PrmB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C0S9_9RHIZ
|
|
SCNpilot_expt_1000_bf_scaffold_3001_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
493..1131
|
phosphoglycerate mutase (EC:5.4.2.1)
Phosphotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1N5_9RHIZ
Phosphotransferase {ECO:0000313|EMBL:EYR82545.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3001_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1137..2108)
|
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ribonucleoside-diphosphate reductase subunit beta; K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003793D05
|
|
SCNpilot_expt_1000_bf_scaffold_3001_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2122..4326)
|
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ribonucleoside-diphosphate reductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV79_RHITR
ribonucleoside-diphosphate reductase, alpha subunit
|
|
SCNpilot_expt_1000_bf_scaffold_3001_5
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4323..4724)
|
Protein NrdI n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FBT9_9RHIZ
Protein NrdI {ECO:0000256|HAMAP-Rule:MF_00128, ECO:0000256|SAAS:SAAS00020464}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
nrdI; protein that stimulates ribonucleotide reduction
|
|
SCNpilot_expt_1000_bf_scaffold_3001_6
unknown
|
Not on your lists |
4987..5676
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_3001_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5673..6134
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ET50_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78626.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
calcium or iron-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_3001_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6144..7079)
|
Protease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBC1_9RHIZ
rbh
Protease {ECO:0000313|EMBL:EYR78625.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative protease
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3001_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7088..8065)
|
yhbU; protease YhbU (EC:3.4.-.-)
rbh
Protease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR85_9RHIZ
Protease {ECO:0000313|EMBL:EYR78624.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3001_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8056..8562)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D086_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78623.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative lipid carrier protein-like protein
|
|
SCNpilot_expt_1000_bf_scaffold_3001_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8668..10152
|
3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {ECO:0000313|EMBL:EYR78622.1}; EC=4.1.1.- {ECO:0000313|EMBL:EYR78622.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC:4.1.1.-); K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]
rbh
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035D56B3
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3001_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10149..10736
|
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
bsdB; phenolic acid decarboxylase subunit B (EC:4.1.1.- 4.1.1.61)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein UbiX n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAD1_9RHIZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3001_13
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11254..11628
|
glutathione S-transferase n=1 Tax=Ponticaulis koreensis RepID=UPI0003B6EC7B
glutathione S-transferase; K11209 GST-like protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
|
|
SCNpilot_expt_1000_bf_scaffold_3001_14
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11639..12016
|
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SHL9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ24738.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_3001_15
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11935..13482)
|
Putative uncharacterized protein n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39BJ9_BURS3
Uncharacterized protein {ECO:0000313|EMBL:AHY52815.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3001_16
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14314..14583
|
ABC transporter n=1 Tax=Rhizobium giardinii RepID=UPI000370E1C9
Sugar ABC transporter permease protein {ECO:0000313|EMBL:AJD44196.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
putative sugar ABC transporter, permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_3001_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14612..15652
|
Putative sugar ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LYV9_RHITR
rbh
putative sugar ABC transporter, substrate-binding protein
rbh
Putative sugar ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EMS95466.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3001_18
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15708..16931
|
LVIVD repeat domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LX54_RHITR
rbh
LVIVD repeat domain-containing protein
rbh
LVIVD repeat domain-containing protein {ECO:0000313|EMBL:AGB75291.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3001_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16944..18023)
|
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000313|EMBL:EYR77482.1}; EC=3.6.3.20 {ECO:0000313|EMBL:EYR77482.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sn-glycerol-3-phosphate import ATP-binding protein UgpC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUG2_9RHIZ
rbh
putative ATP-binding component of ABC transporter; K02023 multiple sugar transport system ATP-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3001_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18035..18868)
|
Trehalose/maltose transport system permease protein MalG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX65_9RHIZ
rbh
Trehalose/maltose transport system permease protein MalG {ECO:0000313|EMBL:EYR77483.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar ABC transporter permease; K02026 multiple sugar transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3001_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18873..19796)
|
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1R3_9RHIZ
rbh
ABC-type sugar transport system permease component {ECO:0000313|EMBL:EYR77484.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter; K02025 multiple sugar transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3001_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19879..21138)
|
Putative binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSR4_9RHIZ
rbh
Putative binding protein {ECO:0000313|EMBL:EYR77485.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter, substrate binding protein (Sugar)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3001_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21177..22349)
|
Methionine gamma-lyase MdeA {ECO:0000313|EMBL:EYR77486.1}; EC=4.4.1.11 {ECO:0000313|EMBL:EYR77486.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Methionine gamma-lyase MdeA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCV0_9RHIZ
rbh
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3001_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22346..23068)
|
GntR domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUG5_9RHIZ
rbh
GntR domain-containing protein {ECO:0000313|EMBL:EYR77487.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_3001_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23385..24275)
|
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mmsB; 3-hydroxyisobutyrate dehydrogenase; K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
rbh
Putative 3-hydroxyisobutyrate dehydrogenase MmsB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGZ6_9RHIZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3001_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24272..25321)
|
3-hydroxyisobutyryl-CoA hydrolase; K01692 enoyl-CoA hydratase [EC:4.2.1.17]
3-hydroxyisobutyryl-CoA hydrolase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR76_9RHIZ
rbh
3-hydroxyisobutyryl-CoA hydrolase {ECO:0000313|EMBL:EYR81491.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3001_27
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25305..25544)
|
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Dihydrolipoyl dehydrogenase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TYB1_9RHIZ
|
|
SCNpilot_expt_1000_bf_scaffold_3001_28
unknown
|
Not on your lists |
25791..26144
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_3001_29
unknown
|
Not on your lists |
26478..26693
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_3001_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26680..27984)
|
bkdB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC:2.3.1.168)
rbh
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex E2 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U510_9RHIZ
rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase E2 component {ECO:0000313|EMBL:EYR81489.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|