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SCNpilot_expt_1000_bf_scaffold_3093

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3093_1
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..224)
DNA (222bp) protein (74aa)
ABC-type uncharacterized transport system, ATPase component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KQM8_MESAW
ABC-type uncharacterized transport system, ATPase component
ABC-type uncharacterized transport system, ATPase component {ECO:0000313|EMBL:AGB46388.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_3093_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(289..1275)
DNA (987bp) protein (329aa)
UPI0003CDF501 related cluster n=1 Tax=unknown RepID=UPI0003CDF501 rbh
ABC transporter {ECO:0000313|EMBL:KDP74275.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ABC-type uncharacterized transport system, periplasmic component rbh
SCNpilot_expt_1000_bf_scaffold_3093_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1435..2199
DNA (765bp) protein (255aa)
GntR family transcriptional regulator n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DD5393
Putative transcriptional regulator protein, GntR family {ECO:0000313|EMBL:AHK45988.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3093_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2302..2826
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000362C25B
Transcriptional regulator {ECO:0000313|EMBL:KDP74273.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3093_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3006..5324
DNA (2319bp) protein (773aa)
salicylyl-CoA 5-hydroxylase; K09461 anthraniloyl-CoA monooxygenase [EC:1.14.13.40]
salicylyl-CoA 5-hydroxylase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036BEFA3 rbh
Salicylyl-CoA 5-hydroxylase {ECO:0000313|EMBL:KDP74272.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_3093_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5321..6091
DNA (771bp) protein (257aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037BCBD9 rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KDP74271.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
D-beta-hydroxybutyrate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3093_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6103..6945
DNA (843bp) protein (281aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:KDP74270.1}; EC=4.2.1.17 {ECO:0000313|EMBL:KDP74270.1};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
enoyl-CoA hydratase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037E1A13
enoyl-CoA hydratase
SCNpilot_expt_1000_bf_scaffold_3093_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6948..8135
DNA (1188bp) protein (396aa)
acyl-CoA dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037CD34D rbh
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:AHK45992.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
acyl-CoA dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3093_9
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8245..8640
DNA (396bp) protein (132aa)
Endoribonuclease L-PSP n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LNE2_RHITR
Endoribonuclease L-PSP {ECO:0000313|EMBL:KDP74266.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_3093_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8652..10676
DNA (2025bp) protein (675aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E462F
Enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AHK45993.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
peroxisomal bifunctional enzyme
SCNpilot_expt_1000_bf_scaffold_3093_11
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10747..11676)
DNA (930bp) protein (310aa)
PREDICTED: probable RuBisCO transcriptional regulator-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C192A7 rbh
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEF22481.1}; TaxID=743720 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva (strain 12-X).;"
SCNpilot_expt_1000_bf_scaffold_3093_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11850..13592
DNA (1743bp) protein (581aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:EHK55775.1}; EC=4.2.1.9 {ECO:0000313|EMBL:EHK55775.1};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] rbh
PREDICTED: putative dihydroxy-acid dehydratase, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C10B61 rbh
SCNpilot_expt_1000_bf_scaffold_3093_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13753..15150
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J861_HYPSM rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79820.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3093_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15205..15474
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETU8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79821.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
YbaK/prolyl-tRNA synthetase associated protein
SCNpilot_expt_1000_bf_scaffold_3093_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15471..15662
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETU8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79821.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3093_16
Streptococcus pneumoniae, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(15983..16273)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Bacillus cereus G9241 RepID=Q4MMT0_BACCE
Uncharacterised protein {ECO:0000313|EMBL:CRG01371.1}; TaxID=1313 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus pneumoniae.;"
SCNpilot_expt_1000_bf_scaffold_3093_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16618..17199
DNA (582bp) protein (194aa)
Xanthine uracil permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR00_9RHIZ
Xanthine uracil permease {ECO:0000313|EMBL:EYR79822.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xanthine/uracil/vitamin C permease; K06901 putative MFS transporter, AGZA family, xanthine/uracil permease
SCNpilot_expt_1000_bf_scaffold_3093_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17332..17817)
DNA (486bp) protein (162aa)
Ureidoglycolate lyase {ECO:0000256|HAMAP-Rule:MF_00616, ECO:0000256|SAAS:SAAS00181913}; EC=4.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00616, ECO:0000256|SAAS:SAAS00181913};; Ureidoglycolatase {ECO:0000256|HAMAP-Rule:MF_00616}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ureidoglycolate lyase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CB08_9RHIZ
allA2; ureidoglycolate hydrolase
SCNpilot_expt_1000_bf_scaffold_3093_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18182..18547
DNA (366bp) protein (122aa)
5-hydroxyisourate hydrolase {ECO:0000256|RuleBase:RU361270}; Short=HIU hydrolase {ECO:0000256|RuleBase:RU361270};; Short=HIUHase {ECO:0000256|RuleBase:RU361270};; EC=3.5.2.17 {ECO:0000256|RuleBase:RU361270};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
5-hydroxyisourate hydrolase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVE9_9RHIZ
uraH2; hydroxyisourate hydrolase
SCNpilot_expt_1000_bf_scaffold_3093_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18551..18895
DNA (345bp) protein (115aa)
Putative xanthine dehydrogenase subunit E {ECO:0000313|EMBL:EYR82271.1}; EC=1.17.1.4 {ECO:0000313|EMBL:EYR82271.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative xanthine dehydrogenase subunit E n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESU2_9RHIZ
xdhA2; xanthine dehydrogenase, small subunit
Displaying 20 items

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