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SCNpilot_expt_1000_bf_scaffold_3372

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3372_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10..264)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV93_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80885.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09984 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3372_2
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(343..567)
DNA (225bp) protein (75aa)
urease subunit gamma; K01430 urease subunit gamma [EC:3.5.1.5]
Urease subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850};; Urea amidohydrolase subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
Urease subunit gamma n=1 Tax=Mesorhizobium sp. LSJC264A00 RepID=V7F4M6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3372_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(688..1524)
DNA (837bp) protein (279aa)
Urease accessory protein UreD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTN8_9RHIZ rbh
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ureD; urease accessory protein; K03190 urease accessory protein
SCNpilot_expt_1000_bf_scaffold_3372_4
unknown

Not on your lists

1569..1697
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3372_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1869..2807)
DNA (939bp) protein (313aa)
Leu/Ile/Val-binding protein 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2P5_9RHIZ
ABC-type branched-chain amino acid transport system periplasmic component {ECO:0000313|EMBL:EYR80882.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Leu/Ile/Val-binding protein 1
SCNpilot_expt_1000_bf_scaffold_3372_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3053..3262)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003785776
Uncharacterized protein {ECO:0000313|EMBL:EYR80881.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3372_7
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3283..3681)
DNA (399bp) protein (133aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Rhizobium sp. CF080 RepID=J2TDT0_9RHIZ
amino acid ABC transporter, ATP-binding protein
High-affinity branched-chain amino acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDN55089.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_expt_1000_bf_scaffold_3372_8
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3720..3923
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JGL0_BURP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA53740.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
SCNpilot_expt_1000_bf_scaffold_3372_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3961..4869)
DNA (909bp) protein (303aa)
High-affinity branched-chain amino acid transport ATP-binding protein LivG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWP4_9RHIZ rbh
ABC-type branched-chain amino acid transport system ATPase component {ECO:0000313|EMBL:EYR77677.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3372_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4936..6237)
DNA (1302bp) protein (434aa)
High-affinity branched-chain amino acid transport system permease protein BraE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CC45_9RHIZ
ABC-type branched-chain amino acid transport system permease component {ECO:0000313|EMBL:EYR80878.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
braE1; high-affinity branched-chain amino acid transport system permease BraE
SCNpilot_expt_1000_bf_scaffold_3372_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6241..7143)
DNA (903bp) protein (301aa)
ABC-type transporter, integral membrane subunit n=8 Tax=Rhizobium meliloti RepID=F6BNS0_SINMB
Branched-chain amino acid ABC-type transport system permease component {ECO:0000313|EMBL:EYR77679.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
livH; high-affinity branched-chain amino acid transport permease ABC transporter protein; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3372_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7432..7986)
DNA (555bp) protein (185aa)
Sarcosine oxidase gamma subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3P2_9RHIZ
Sarcosine oxidase gamma subunit {ECO:0000313|EMBL:EYR80875.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sarcosine oxidase gamma subunit
SCNpilot_expt_1000_bf_scaffold_3372_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7997..10954)
DNA (2958bp) protein (986aa)
Sarcosine oxidase subunit alpha {ECO:0000313|EMBL:EYR80874.1}; EC=1.5.3.1 {ECO:0000313|EMBL:EYR80874.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Sarcosine oxidase subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZL9_9RHIZ rbh
sarcosine oxidase, alpha subunit
SCNpilot_expt_1000_bf_scaffold_3372_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10951..11133)
DNA (183bp) protein (61aa)
Sarcosine oxidase subunit delta {ECO:0000313|EMBL:EYR80873.1}; EC=1.5.3.1 {ECO:0000313|EMBL:EYR80873.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Sarcosine oxidase subunit delta n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ83_9RHIZ
soxDe; sarcosine oxidase subunit delta
SCNpilot_expt_1000_bf_scaffold_3372_15
unknown

Not on your lists

11972..12094
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3372_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12632..13447
DNA (816bp) protein (272aa)
3'(2'),5'-bisphosphate nucleotidase CysQ {ECO:0000313|EMBL:EYR80870.1}; EC=3.1.3.7 {ECO:0000313|EMBL:EYR80870.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative inositol monophosphatase involved in exopolysaccharide production; K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] rbh
3'(2'),5'-bisphosphate nucleotidase CysQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3N7_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_3372_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13665..14735)
DNA (1071bp) protein (357aa)
Nodulation protein NolG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZJ4_9RHIZ
Nodulation protein NolG {ECO:0000313|EMBL:EYR80863.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acriflavin resistance protein
SCNpilot_expt_1000_bf_scaffold_3372_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14864..16723)
DNA (1860bp) protein (620aa)
Nodulation protein NolG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZJ4_9RHIZ
Nodulation protein NolG {ECO:0000313|EMBL:EYR80863.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
efflux transporter protein
SCNpilot_expt_1000_bf_scaffold_3372_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16720..17793)
DNA (1074bp) protein (358aa)
Putative component of multidrug efflux system n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQE8_9RHIZ rbh
Putative component of multidrug efflux system {ECO:0000313|EMBL:EYR80862.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RND family mulitdrug efflux protein
SCNpilot_expt_1000_bf_scaffold_3372_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17790..18860)
DNA (1071bp) protein (357aa)
Putative component of multidrug efflux system n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAL2_9RHIZ rbh
Putative component of multidrug efflux system {ECO:0000313|EMBL:EYR80861.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RND family mulitdrug efflux protein rbh
SCNpilot_expt_1000_bf_scaffold_3372_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19388..21712)
DNA (2325bp) protein (775aa)
Chemoreceptor McpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYJ4_9RHIZ rbh
Chemoreceptor McpA {ECO:0000313|EMBL:EYR80860.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
methyl-accepting chemotaxis protein; K05874 methyl-accepting chemotaxis protein I, serine sensor receptor rbh
SCNpilot_expt_1000_bf_scaffold_3372_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22102..23055
DNA (954bp) protein (318aa)
Putative ring-cleaving dioxygenase MhqA {ECO:0000313|EMBL:EYR80859.1}; EC=1.13.11.- {ECO:0000313|EMBL:EYR80859.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mhqA; ring-cleaving dioxygenase mhqA (EC:1.13.11.-) rbh
Putative ring-cleaving dioxygenase MhqA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2C9_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_3372_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23102..23647
DNA (546bp) protein (182aa)
Putative flavoprotein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6V1_9RHIZ
Putative flavoprotein {ECO:0000313|EMBL:EYR80858.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NADPH:quinone reductase
SCNpilot_expt_1000_bf_scaffold_3372_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23711..24688)
DNA (978bp) protein (326aa)
Putative ring-cleaving dioxygenase MhqO {ECO:0000313|EMBL:EYR80857.1}; EC=1.13.11.- {ECO:0000313|EMBL:EYR80857.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative ring-cleaving dioxygenase MhqO n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY18_9RHIZ
hypothetical protein; K06999 phospholipase/carboxylesterase
SCNpilot_expt_1000_bf_scaffold_3372_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24706..25227)
DNA (522bp) protein (174aa)
Putative ring-cleaving dioxygenase MhqO {ECO:0000313|EMBL:EYR80857.1}; EC=1.13.11.- {ECO:0000313|EMBL:EYR80857.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative ring-cleaving dioxygenase MhqO n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY18_9RHIZ
putative glyoxalase/bleomycin resistance protein/dioxygenase; K06999 phospholipase/carboxylesterase
SCNpilot_expt_1000_bf_scaffold_3372_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25380..25598)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHX2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80856.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3372_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26258..26695
DNA (438bp) protein (146aa)
Nodulation protein T n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EU84_9RHIZ
Nodulation protein T {ECO:0000313|EMBL:EYR80855.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nodT; Nodulation protein T
SCNpilot_expt_1000_bf_scaffold_3372_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26736..27635
DNA (900bp) protein (300aa)
Nodulation protein T n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EU84_9RHIZ
Nodulation protein T {ECO:0000313|EMBL:EYR80855.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nodT; Nodulation protein T
SCNpilot_expt_1000_bf_scaffold_3372_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27707..28408)
DNA (702bp) protein (234aa)
HTH-type transcriptional repressor CsiR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWZ5_9RHIZ rbh
HTH-type transcriptional repressor CsiR {ECO:0000313|EMBL:EYR80854.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ygaE; GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3372_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28516..29355
DNA (840bp) protein (280aa)
Ureidoglycolate lyase {ECO:0000313|EMBL:EYR80853.1}; EC=4.3.2.3 {ECO:0000313|EMBL:EYR80853.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ureidoglycolate lyase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1J6_9RHIZ rbh
5-carboxymethyl-2-hydroxymuconate delta-isomerase rbh
Displaying items 1-30 of 32 in total

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