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SCNpilot_expt_1000_bf_scaffold_3602

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3602_1
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(19..1368)
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Cronobacter sakazakii 696 RepID=K8CMX3_CROSK
Uncharacterized protein {ECO:0000313|EMBL:CDZ88583.1}; TaxID=1830 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber.;"
SCNpilot_expt_1000_bf_scaffold_3602_2
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1531..2322
DNA (792bp) protein (264aa)
formate dehydrogenase alpha chain protein; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase alpha chain protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP26_AGRRK
Formate dehydrogenase {ECO:0000313|EMBL:KEA08348.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_3602_3
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2399..3328
DNA (930bp) protein (310aa)
Cytochrome bd ubiquinol oxidase, subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome bd ubiquinol oxidase, subunit I n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP27_AGRRK
Cytochrome D ubiquinol oxidase subunit I {ECO:0000313|EMBL:KEA08347.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_3602_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3346..3909
DNA (564bp) protein (188aa)
Protein GrpE n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP31_AGRRK
grpE; molecular chaperone heat shock protein (hsp-70)
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_3602_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3906..4448)
DNA (543bp) protein (181aa)
Mechanosensitive ion channel protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP32_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:GAJ93457.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
mechanosensitive ion channel protein
SCNpilot_expt_1000_bf_scaffold_3602_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4499..4783)
DNA (285bp) protein (95aa)
moeA; molybdopterin biosynthesis protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
Molybdopterin biosynthesis protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP33_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:GAJ93458.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_3602_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5069..6952
DNA (1884bp) protein (628aa)
Chaperone protein DnaK n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP34_AGRRK rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
dnaK; chaperone protein (Heat shock protein 70); K04043 molecular chaperone DnaK rbh
SCNpilot_expt_1000_bf_scaffold_3602_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7053..7955
DNA (903bp) protein (301aa)
Curved DNA-binding protein CbpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNW4_9RHIZ rbh
Curved DNA-binding protein CbpA {ECO:0000313|EMBL:EYR84576.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dnaJ; DNAJ molecular chaperone protein
SCNpilot_expt_1000_bf_scaffold_3602_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7958..8218
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTP0_9RHIZ
MerR HTH family regulatory protein {ECO:0000313|EMBL:EYR84577.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3602_10
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8276..9655
DNA (1380bp) protein (460aa)
Two-component response regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP38_AGRRK rbh
Fis family transcriptional regulator {ECO:0000313|EMBL:KEA08339.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
two-component response regulator protein rbh
SCNpilot_expt_1000_bf_scaffold_3602_11
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11927..12898
DNA (972bp) protein (324aa)
ATPase AAA n=1 Tax=Methylocystis rosea RepID=UPI0003784FCB
clpB; chaperone protein ClpB
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034, ECO:0000313|EMBL:CCJ06273.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_3602_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12925..13260
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP41_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:EYR84578.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3602_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13247..13441
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NFR7_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27826.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3602_14
unknown

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comp(13379..13495)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3602_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14506..15015
DNA (510bp) protein (170aa)
Linocin-M18 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHD5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84580.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Linocin_M18 bacteriocin protein
Displaying 15 items

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