name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_5177_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3..1166
|
DNA-damage-inducible protein F n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIQ5_9RHIZ
rbh
DNA-damage-inducible protein F {ECO:0000313|EMBL:EYR83157.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MATE efflux family protein
|
|
SCNpilot_expt_1000_bf_scaffold_5177_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1146..1382)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYS2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83156.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_5177_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1521..2606)
|
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dihydroorotate dehydrogenase; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7K2_9RHIZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5177_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2606..2953)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D340_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83154.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_5177_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3062..3490
|
Uncharacterized protein n=2 Tax=Shinella zoogloeoides DD12 RepID=V5EZ44_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83153.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative signal peptide protein
|
|
SCNpilot_expt_1000_bf_scaffold_5177_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3557..4210
|
Glycerol metabolism activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQU9_9RHIZ
rbh
Glycerol metabolism activator {ECO:0000313|EMBL:EYR83152.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LuxR family two-component transcriptional regulator
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5177_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4214..7054)
|
Autoinducer 2 sensor kinase/phosphatase LuxQ {ECO:0000313|EMBL:EYR83151.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EYR83151.1};; EC=3.1.3.- {ECO:0000313|EMBL:EYR83151.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Autoinducer 2 sensor kinase/phosphatase LuxQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN86_9RHIZ
two-component sensor histidine kinase protein
|
|
SCNpilot_expt_1000_bf_scaffold_5177_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7675..8115
|
Large-conductance mechanosensitive channel n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BX98_9RHIZ
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mscL; large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel
|
|
SCNpilot_expt_1000_bf_scaffold_5177_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8249..9856)
|
Putative 2-ketoarginine decarboxylase AruI {ECO:0000313|EMBL:EYR83361.1}; EC=4.1.1.75 {ECO:0000313|EMBL:EYR83361.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Thiamine pyrophosphate-requiring enzyme (EC:2.2.1.6)
rbh
Putative 2-ketoarginine decarboxylase AruI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWN1_9RHIZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5177_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9853..11043)
|
Arginine--pyruvate transaminase AruH {ECO:0000313|EMBL:EYR83362.1}; EC=2.6.1.84 {ECO:0000313|EMBL:EYR83362.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Arginine--pyruvate transaminase AruH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZL3_9RHIZ
rbh
aminotransferase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5177_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11172..11795)
|
Putative HTH-type transcriptional regulator, TetR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4A6_9RHIZ
rbh
Putative HTH-type transcriptional regulator, TetR family {ECO:0000313|EMBL:EYR83363.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
HTH-type transcriptional regulator, TetR family
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5177_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11807..12685)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVC1_9RHIZ
rbh
N-dimethylarginine dimethylaminohydrolase {ECO:0000313|EMBL:EYR83364.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_5177_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12898..13659
|
Amino-acid transport ATP-binding protein; K10025 arginine/ornithine transport system ATP-binding protein [EC:3.6.3.-]
Arginine/ornithine transport ATP-binding protein AotP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFA4_9RHIZ
rbh
Arginine/ornithine transport ATP-binding protein AotP {ECO:0000313|EMBL:EYR83365.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_5177_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13689..14471
|
Histidine-binding periplasmic protein HisJ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWN4_9RHIZ
rbh
Histidine-binding periplasmic protein HisJ {ECO:0000313|EMBL:EYR83366.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5177_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14685..15413
|
Histidine transport system permease protein HisQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZL9_9RHIZ
rbh
Histidine transport system permease protein HisQ {ECO:0000313|EMBL:EYR83367.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative amino acid ABC transporter, inner membrane component; K02029 polar amino acid transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5177_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15410..16231
|
Octopine transport system permease protein OccM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4B1_9RHIZ
rbh
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR83368.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transport system permease ABC transporter protein; K02029 polar amino acid transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5177_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16248..17417
|
Hippurate hydrolase HipO {ECO:0000313|EMBL:EYR83369.1}; EC=3.5.1.32 {ECO:0000313|EMBL:EYR83369.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Hippurate hydrolase HipO n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVC6_9RHIZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5177_18
unknown
|
Not on your lists |
18077..18334
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_5177_19
unknown
|
Not on your lists |
18703..18951
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_5177_20
unknown
|
Not on your lists |
19004..19279
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_5177_21
unknown
|
Not on your lists |
19330..19581
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_5177_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19802..21217
|
Cytochrome d ubiquinol oxidase subunit 1 {ECO:0000313|EMBL:EYR83372.1}; EC=1.10.3.- {ECO:0000313|EMBL:EYR83372.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Cytochrome bd-type quinol oxidase, subunit 1 (EC:1.10.3.-)
rbh
cytochrome D ubiquinol oxidase subunit I n=1 Tax=Sinorhizobium medicae RepID=UPI00036BA86F
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5177_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21207..21743
|
Cytochrome d ubiquinol oxidase subunit 2 {ECO:0000313|EMBL:EYR83373.1}; EC=1.10.3.- {ECO:0000313|EMBL:EYR83373.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytochrome d ubiquinol oxidase, subunit II; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-]
Cytochrome d ubiquinol oxidase subunit 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CA09_9RHIZ
|