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SCNpilot_expt_1000_bf_scaffold_5177

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5177_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1166
DNA (1164bp) protein (388aa)
DNA-damage-inducible protein F n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIQ5_9RHIZ rbh
DNA-damage-inducible protein F {ECO:0000313|EMBL:EYR83157.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MATE efflux family protein
SCNpilot_expt_1000_bf_scaffold_5177_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1146..1382)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYS2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83156.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5177_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1521..2606)
DNA (1086bp) protein (362aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dihydroorotate dehydrogenase; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7K2_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_5177_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2606..2953)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D340_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83154.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5177_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3062..3490
DNA (429bp) protein (143aa)
Uncharacterized protein n=2 Tax=Shinella zoogloeoides DD12 RepID=V5EZ44_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83153.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative signal peptide protein
SCNpilot_expt_1000_bf_scaffold_5177_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3557..4210
DNA (654bp) protein (218aa)
Glycerol metabolism activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQU9_9RHIZ rbh
Glycerol metabolism activator {ECO:0000313|EMBL:EYR83152.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LuxR family two-component transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_5177_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4214..7054)
DNA (2841bp) protein (947aa)
Autoinducer 2 sensor kinase/phosphatase LuxQ {ECO:0000313|EMBL:EYR83151.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EYR83151.1};; EC=3.1.3.- {ECO:0000313|EMBL:EYR83151.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Autoinducer 2 sensor kinase/phosphatase LuxQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN86_9RHIZ
two-component sensor histidine kinase protein
SCNpilot_expt_1000_bf_scaffold_5177_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7675..8115
DNA (441bp) protein (147aa)
Large-conductance mechanosensitive channel n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BX98_9RHIZ
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mscL; large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_5177_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8249..9856)
DNA (1608bp) protein (536aa)
Putative 2-ketoarginine decarboxylase AruI {ECO:0000313|EMBL:EYR83361.1}; EC=4.1.1.75 {ECO:0000313|EMBL:EYR83361.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Thiamine pyrophosphate-requiring enzyme (EC:2.2.1.6) rbh
Putative 2-ketoarginine decarboxylase AruI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWN1_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_5177_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9853..11043)
DNA (1191bp) protein (397aa)
Arginine--pyruvate transaminase AruH {ECO:0000313|EMBL:EYR83362.1}; EC=2.6.1.84 {ECO:0000313|EMBL:EYR83362.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Arginine--pyruvate transaminase AruH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZL3_9RHIZ rbh
aminotransferase rbh
SCNpilot_expt_1000_bf_scaffold_5177_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11172..11795)
DNA (624bp) protein (208aa)
Putative HTH-type transcriptional regulator, TetR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4A6_9RHIZ rbh
Putative HTH-type transcriptional regulator, TetR family {ECO:0000313|EMBL:EYR83363.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
HTH-type transcriptional regulator, TetR family rbh
SCNpilot_expt_1000_bf_scaffold_5177_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11807..12685)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVC1_9RHIZ rbh
N-dimethylarginine dimethylaminohydrolase {ECO:0000313|EMBL:EYR83364.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5177_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12898..13659
DNA (762bp) protein (254aa)
Amino-acid transport ATP-binding protein; K10025 arginine/ornithine transport system ATP-binding protein [EC:3.6.3.-]
Arginine/ornithine transport ATP-binding protein AotP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFA4_9RHIZ rbh
Arginine/ornithine transport ATP-binding protein AotP {ECO:0000313|EMBL:EYR83365.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_5177_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13689..14471
DNA (783bp) protein (261aa)
Histidine-binding periplasmic protein HisJ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWN4_9RHIZ rbh
Histidine-binding periplasmic protein HisJ {ECO:0000313|EMBL:EYR83366.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_5177_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14685..15413
DNA (729bp) protein (243aa)
Histidine transport system permease protein HisQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZL9_9RHIZ rbh
Histidine transport system permease protein HisQ {ECO:0000313|EMBL:EYR83367.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative amino acid ABC transporter, inner membrane component; K02029 polar amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_5177_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15410..16231
DNA (822bp) protein (274aa)
Octopine transport system permease protein OccM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4B1_9RHIZ rbh
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR83368.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transport system permease ABC transporter protein; K02029 polar amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_5177_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16248..17417
DNA (1170bp) protein (390aa)
Hippurate hydrolase HipO {ECO:0000313|EMBL:EYR83369.1}; EC=3.5.1.32 {ECO:0000313|EMBL:EYR83369.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hipO2; putative hippurate hydrolase protein; K01451 hippurate hydrolase [EC:3.5.1.32] rbh
Hippurate hydrolase HipO n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVC6_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_5177_18
unknown

Not on your lists

18077..18334
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5177_19
unknown

Not on your lists

18703..18951
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5177_20
unknown

Not on your lists

19004..19279
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5177_21
unknown

Not on your lists

19330..19581
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5177_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19802..21217
DNA (1416bp) protein (472aa)
Cytochrome d ubiquinol oxidase subunit 1 {ECO:0000313|EMBL:EYR83372.1}; EC=1.10.3.- {ECO:0000313|EMBL:EYR83372.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Cytochrome bd-type quinol oxidase, subunit 1 (EC:1.10.3.-) rbh
cytochrome D ubiquinol oxidase subunit I n=1 Tax=Sinorhizobium medicae RepID=UPI00036BA86F rbh
SCNpilot_expt_1000_bf_scaffold_5177_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21207..21743
DNA (537bp) protein (179aa)
Cytochrome d ubiquinol oxidase subunit 2 {ECO:0000313|EMBL:EYR83373.1}; EC=1.10.3.- {ECO:0000313|EMBL:EYR83373.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytochrome d ubiquinol oxidase, subunit II; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-]
Cytochrome d ubiquinol oxidase subunit 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CA09_9RHIZ
Displaying 23 items

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