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SCNpilot_expt_1000_bf_scaffold_5218

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5218_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(96..272)
DNA (177bp) protein (59aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase n=1 Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) RepID=K9ZPZ0_ANACC
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EYR84551.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
response regulator receiver modulated diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_5218_2
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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962..2170
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI0003751860 rbh
Wenxma_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ70915.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
wcaL2; group 1 glycosyl transferase rbh
SCNpilot_expt_1000_bf_scaffold_5218_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2217..2975)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036DA030
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJC63500.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5218_4
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3696..4277
DNA (582bp) protein (194aa)
dTDP-4-dehydrorhamnose 3,5-epimerase; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:ABS68781.1}; EC=5.1.3.13 {ECO:0000313|EMBL:ABS68781.1};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IL88_XANP2
SCNpilot_expt_1000_bf_scaffold_5218_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4280..5338
DNA (1059bp) protein (353aa)
rfbB; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] rbh
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MIU0_RHIL3 rbh
SCNpilot_expt_1000_bf_scaffold_5218_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5344..6270
DNA (927bp) protein (309aa)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:AIC26712.1}; EC=1.1.1.133 {ECO:0000313|EMBL:AIC26712.1};; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
dTDP-4-dehydrorhamnose reductase; K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000373698F
SCNpilot_expt_1000_bf_scaffold_5218_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6267..6695
DNA (429bp) protein (143aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
rfbA; glucose-1-phosphate thymidylyltransferase; K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HCK7_RHIRD
SCNpilot_expt_1000_bf_scaffold_5218_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6692..7102
DNA (411bp) protein (137aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XUE7_RHIRD
SCNpilot_expt_1000_bf_scaffold_5218_9
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7643..8092
DNA (450bp) protein (150aa)
putative acyltransferase family protein (EC:2.3.1.-)
Acyltransferase 3 n=1 Tax=Roseovarius sp. TM1035 RepID=A6DZI3_9RHOB
Acyltransferase 3 {ECO:0000313|EMBL:EDM32568.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM1035.;"
Displaying 9 items

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