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SCNpilot_expt_1000_bf_scaffold_5707

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5707_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..931)
DNA (930bp) protein (310aa)
DNA repair protein RecN n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4H0_9RHIZ
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
recN; DNA repair protein RecN
SCNpilot_expt_1000_bf_scaffold_5707_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(952..1818)
DNA (867bp) protein (289aa)
Outer membrane protein assembly factor BamD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVJ4_9RHIZ rbh
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
comL; competence lipoprotein ComL; K05807 putative lipoprotein rbh
SCNpilot_expt_1000_bf_scaffold_5707_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1972..2931)
DNA (960bp) protein (320aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase {ECO:0000256|HAMAP-Rule:MF_00388, ECO:0000256|SAAS:SAAS00041388}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_00388, ECO:0000256|SAAS:SAAS00041386};; UDP-3-O-acyl-GlcNAc deacetylase {ECO:0000256|HAMAP-Rule:MF_00388}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFI7_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_5707_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3265..5028)
DNA (1764bp) protein (588aa)
Cell division protein FtsZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7V2_9RHIZ rbh
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cell division protein FtsZ; K03531 cell division protein FtsZ rbh
SCNpilot_expt_1000_bf_scaffold_5707_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5125..5397)
DNA (273bp) protein (91aa)
Cell division protein FtsA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNQ1_9RHIZ
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsA; cell division protein FtsA
SCNpilot_expt_1000_bf_scaffold_5707_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5391..6173)
DNA (783bp) protein (261aa)
Cell division protein FtsA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNQ1_9RHIZ
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsA; cell division protein; K03590 cell division protein FtsA
SCNpilot_expt_1000_bf_scaffold_5707_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6116..6448)
DNA (333bp) protein (111aa)
Cell division protein FtsA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNQ1_9RHIZ
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsA; cell division protein FtsA; K03590 cell division protein FtsA
SCNpilot_expt_1000_bf_scaffold_5707_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6445..7365)
DNA (921bp) protein (307aa)
Cell division protein FtsQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXS0_9RHIZ rbh
Cell division protein FtsQ {ECO:0000256|HAMAP-Rule:MF_00911, ECO:0000256|SAAS:SAAS00006985}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsQ; cell division transmembrane protein; K03589 cell division protein FtsQ rbh
SCNpilot_expt_1000_bf_scaffold_5707_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7353..8279)
DNA (927bp) protein (309aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ddl; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] rbh
D-alanine--D-alanine ligase n=1 Tax=Rhizobium giardinii RepID=UPI00038258D3 rbh
SCNpilot_expt_1000_bf_scaffold_5707_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8727..9776
DNA (1050bp) protein (350aa)
Metabolite-proton symporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWL2_9RHIZ
Metabolite-proton symporter {ECO:0000313|EMBL:EYR77753.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
yhjE; putative transporter
Displaying 10 items

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