name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_5964_1
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3..203)
|
S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase {ECO:0000313|EMBL:EZQ15747.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
|
|
SCNpilot_expt_1000_bf_scaffold_5964_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1223..2182)
|
Putative dioxygenase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3T0_9RHIZ
rbh
Putative dioxygenase protein {ECO:0000313|EMBL:EYR83212.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_5964_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2536..3678
|
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZP8_9RHIZ
rbh
Putative transmembrane protein {ECO:0000313|EMBL:EYR83211.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5964_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3688..4569)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJC1_9RHIZ
rbh
Polyphosphate kinase 2, PA0141 family {ECO:0000313|EMBL:EYR83210.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5964_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4714..5301
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PAS/PAC sensor signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Alkaline phosphatase synthesis sensor protein PhoR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZE6_9RHIZ
|
|
SCNpilot_expt_1000_bf_scaffold_5964_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5323..5997
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phoR; two component sensor histidine kinase protein, phosphate regulon sensor PhoR; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Alkaline phosphatase synthesis sensor protein PhoR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZE6_9RHIZ
|
|
SCNpilot_expt_1000_bf_scaffold_5964_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6187..7221
|
Protein SphX n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D874_9RHIZ
rbh
ABC-type phosphate transport system periplasmic component {ECO:0000313|EMBL:EYR83208.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pstS; Phosphate-binding protein PstS; K02040 phosphate transport system substrate-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5964_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8358..8729
|
Phosphate ABC transporter, permease protein PstC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3S5_9RHIZ
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:EYR83207.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pstC; phosphate ABC transporter permease protein PstC
|
|
SCNpilot_expt_1000_bf_scaffold_5964_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8726..10042
|
ABC transporter, membrane spanning protein PstA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZP3_9RHIZ
rbh
ABC transporter, membrane spanning protein PstA {ECO:0000313|EMBL:EYR83206.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Phosphate ABC transporter permease
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5964_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10056..10871
|
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PREDICTED: ABC transporter I family member 17-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C14A6D
rbh
pstB; high-affinity phosphate transport protein (ABC superfamily, atp_bind)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_5964_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10922..11758
|
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3WYM3_RHIFR
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phoU; Phosphate transport system protein PhoU; K02039 phosphate transport system protein
|
|
SCNpilot_expt_1000_bf_scaffold_5964_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11769..12335
|
Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0A7_9RHIZ
Phosphate regulon transcriptional regulatory protein PhoB {ECO:0000313|EMBL:EYR83203.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phob1; Phosphate regulon transcriptional regulatory protein PhoB; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
|
|
SCNpilot_expt_1000_bf_scaffold_5964_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12565..13101)
|
GcrA cell cycle regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CKA9_9RHIZ
rbh
GcrA cell cycle regulator {ECO:0000313|EMBL:EYR83202.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K13583 GcrA cell cycle regulator
|
|
SCNpilot_expt_1000_bf_scaffold_5964_14
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13478..14218)
|
Ion transporter, putative n=5 Tax=Burkholderia pseudomallei RepID=Q3JQC1_BURP1
Uncharacterized protein {ECO:0000313|EMBL:CDX33909.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
ion transporter
|
|
SCNpilot_expt_1000_bf_scaffold_5964_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14567..14695
|
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
argD; acetylornithine aminotransferase (EC:2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLH6_9RHIZ
|
|
SCNpilot_expt_1000_bf_scaffold_5964_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14721..15632
|
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
argF; ornithine carbamoyltransferase (OTCase) (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XQF6_RHIRD
|
|
SCNpilot_expt_1000_bf_scaffold_5964_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15822..16817
|
33 kDa chaperonin n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5Q8_9RHIZ
rbh
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hslO; Hsp33 protein; K04083 molecular chaperone Hsp33
|
|
SCNpilot_expt_1000_bf_scaffold_5964_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17010..17402)
|
Protein ApaG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLG9_9RHIZ
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
apaG; ApaG; K06195 ApaG protein
|
|
SCNpilot_expt_1000_bf_scaffold_5964_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17557..18258)
|
O-succinylhomoserine sulfhydrylase MetZ {ECO:0000313|EMBL:EYR83197.1}; EC=2.5.1.- {ECO:0000313|EMBL:EYR83197.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
O-succinylhomoserine sulfhydrylase; K10764 O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
O-succinylhomoserine sulfhydrylase MetZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG21_9RHIZ
|
|
SCNpilot_expt_1000_bf_scaffold_5964_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18255..18746)
|
O-succinylhomoserine sulfhydrylase MetZ {ECO:0000313|EMBL:EYR83197.1}; EC=2.5.1.- {ECO:0000313|EMBL:EYR83197.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
metZ; O-succinylhomoserine sulfhydrylase MetZ (EC:2.5.1.-)
O-succinylhomoserine sulfhydrylase MetZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG21_9RHIZ
|
|
SCNpilot_expt_1000_bf_scaffold_5964_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18948..19766
|
2'-deoxycytidine 5'-triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13]
2-deoxycytidine 5-triphosphate deaminase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX93_9RHIZ
2-deoxycytidine 5-triphosphate deaminase {ECO:0000313|EMBL:EYR83196.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_5964_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19763..20041
|
dcd; deoxycytidine triphosphate (dCTP) deaminase (EC:3.5.4.13)
2-deoxycytidine 5-triphosphate deaminase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX93_9RHIZ
2-deoxycytidine 5-triphosphate deaminase {ECO:0000313|EMBL:EYR83196.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_5964_23
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20629..20895)
|
Integrase catalytic region (Fragment) n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F926_9RHIZ
Transposase {ECO:0000313|EMBL:KGB27055.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
transposase IS3/IS911 family protein
|