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SCNpilot_expt_1000_bf_scaffold_5964

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5964_1
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..203)
DNA (201bp) protein (67aa)
S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase {ECO:0000313|EMBL:EZQ15747.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_5964_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1223..2182)
DNA (960bp) protein (320aa)
dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16] rbh
Putative dioxygenase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3T0_9RHIZ rbh
Putative dioxygenase protein {ECO:0000313|EMBL:EYR83212.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_5964_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2536..3678
DNA (1143bp) protein (381aa)
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZP8_9RHIZ rbh
Putative transmembrane protein {ECO:0000313|EMBL:EYR83211.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5964_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3688..4569)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJC1_9RHIZ rbh
Polyphosphate kinase 2, PA0141 family {ECO:0000313|EMBL:EYR83210.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5964_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4714..5301
DNA (588bp) protein (196aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PAS/PAC sensor signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Alkaline phosphatase synthesis sensor protein PhoR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZE6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5964_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5323..5997
DNA (675bp) protein (225aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phoR; two component sensor histidine kinase protein, phosphate regulon sensor PhoR; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Alkaline phosphatase synthesis sensor protein PhoR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZE6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5964_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6187..7221
DNA (1035bp) protein (345aa)
Protein SphX n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D874_9RHIZ rbh
ABC-type phosphate transport system periplasmic component {ECO:0000313|EMBL:EYR83208.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pstS; Phosphate-binding protein PstS; K02040 phosphate transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_5964_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8358..8729
DNA (372bp) protein (124aa)
Phosphate ABC transporter, permease protein PstC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3S5_9RHIZ
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:EYR83207.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pstC; phosphate ABC transporter permease protein PstC
SCNpilot_expt_1000_bf_scaffold_5964_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8726..10042
DNA (1317bp) protein (439aa)
ABC transporter, membrane spanning protein PstA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZP3_9RHIZ rbh
ABC transporter, membrane spanning protein PstA {ECO:0000313|EMBL:EYR83206.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Phosphate ABC transporter permease rbh
SCNpilot_expt_1000_bf_scaffold_5964_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10056..10871
DNA (816bp) protein (272aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PREDICTED: ABC transporter I family member 17-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C14A6D rbh
pstB; high-affinity phosphate transport protein (ABC superfamily, atp_bind) rbh
SCNpilot_expt_1000_bf_scaffold_5964_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10922..11758
DNA (837bp) protein (279aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3WYM3_RHIFR
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phoU; Phosphate transport system protein PhoU; K02039 phosphate transport system protein
SCNpilot_expt_1000_bf_scaffold_5964_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11769..12335
DNA (567bp) protein (189aa)
Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0A7_9RHIZ
Phosphate regulon transcriptional regulatory protein PhoB {ECO:0000313|EMBL:EYR83203.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phob1; Phosphate regulon transcriptional regulatory protein PhoB; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
SCNpilot_expt_1000_bf_scaffold_5964_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12565..13101)
DNA (537bp) protein (179aa)
GcrA cell cycle regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CKA9_9RHIZ rbh
GcrA cell cycle regulator {ECO:0000313|EMBL:EYR83202.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K13583 GcrA cell cycle regulator
SCNpilot_expt_1000_bf_scaffold_5964_14
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13478..14218)
DNA (741bp) protein (247aa)
Ion transporter, putative n=5 Tax=Burkholderia pseudomallei RepID=Q3JQC1_BURP1
Uncharacterized protein {ECO:0000313|EMBL:CDX33909.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
ion transporter
SCNpilot_expt_1000_bf_scaffold_5964_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14567..14695
DNA (129bp) protein (43aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
argD; acetylornithine aminotransferase (EC:2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLH6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5964_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14721..15632
DNA (912bp) protein (304aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
argF; ornithine carbamoyltransferase (OTCase) (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XQF6_RHIRD
SCNpilot_expt_1000_bf_scaffold_5964_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15822..16817
DNA (996bp) protein (332aa)
33 kDa chaperonin n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5Q8_9RHIZ rbh
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hslO; Hsp33 protein; K04083 molecular chaperone Hsp33
SCNpilot_expt_1000_bf_scaffold_5964_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17010..17402)
DNA (393bp) protein (131aa)
Protein ApaG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLG9_9RHIZ
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
apaG; ApaG; K06195 ApaG protein
SCNpilot_expt_1000_bf_scaffold_5964_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17557..18258)
DNA (702bp) protein (234aa)
O-succinylhomoserine sulfhydrylase MetZ {ECO:0000313|EMBL:EYR83197.1}; EC=2.5.1.- {ECO:0000313|EMBL:EYR83197.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
O-succinylhomoserine sulfhydrylase; K10764 O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
O-succinylhomoserine sulfhydrylase MetZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG21_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5964_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18255..18746)
DNA (492bp) protein (164aa)
O-succinylhomoserine sulfhydrylase MetZ {ECO:0000313|EMBL:EYR83197.1}; EC=2.5.1.- {ECO:0000313|EMBL:EYR83197.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
metZ; O-succinylhomoserine sulfhydrylase MetZ (EC:2.5.1.-)
O-succinylhomoserine sulfhydrylase MetZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG21_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5964_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18948..19766
DNA (819bp) protein (273aa)
2'-deoxycytidine 5'-triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13]
2-deoxycytidine 5-triphosphate deaminase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX93_9RHIZ
2-deoxycytidine 5-triphosphate deaminase {ECO:0000313|EMBL:EYR83196.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_5964_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19763..20041
DNA (279bp) protein (93aa)
dcd; deoxycytidine triphosphate (dCTP) deaminase (EC:3.5.4.13)
2-deoxycytidine 5-triphosphate deaminase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX93_9RHIZ
2-deoxycytidine 5-triphosphate deaminase {ECO:0000313|EMBL:EYR83196.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_5964_23
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20629..20895)
DNA (267bp) protein (89aa)
Integrase catalytic region (Fragment) n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F926_9RHIZ
Transposase {ECO:0000313|EMBL:KGB27055.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
transposase IS3/IS911 family protein
Displaying 23 items

View Taxonomy