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SCNpilot_expt_1000_bf_scaffold_20224

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_20224_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..241)
DNA (240bp) protein (80aa)
Type IV secretion protein AvhB4 n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JLH5_9RHIZ
Type IV secretion/conjugal transfer ATPase, VirB4 family {ECO:0000313|EMBL:EYR78174.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
avhB4; type IV secretion protein AvhB4; K03199 type IV secretion system protein VirB4
SCNpilot_expt_1000_bf_scaffold_20224_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(180..755)
DNA (576bp) protein (192aa)
Type IV secretion protein AvhB4 n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JLH5_9RHIZ
Type IV secretion/conjugal transfer ATPase, VirB4 family {ECO:0000313|EMBL:EYR78174.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
avhB4; type IV secretion protein AvhB4; K03199 type IV secretion system protein VirB4
SCNpilot_expt_1000_bf_scaffold_20224_3
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(820..1515)
DNA (696bp) protein (232aa)
Type IV secretion protein AvhB4 n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JLH5_9RHIZ
Type IV secretion protein AvhB4 {ECO:0000313|EMBL:ELT47438.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
virB4; type IV secretion system protein VirB4
SCNpilot_expt_1000_bf_scaffold_20224_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1508..1849)
DNA (342bp) protein (114aa)
Type IV secretion system protein VirB3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGX2_9RHIZ
Type IV secretory pathway, VirB3 component {ECO:0000313|EMBL:EYR82839.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
virB3; type IV secretion system protein VirB3
SCNpilot_expt_1000_bf_scaffold_20224_5
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1855..2154)
DNA (300bp) protein (100aa)
VIRB2 type IV secretion fmaily protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JL75_9RHIZ
VIRB2 type IV secretion fmaily protein {ECO:0000313|EMBL:ELT47440.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
VIRB2 type IV secretion fmaily protein; K03197 type IV secretion system protein VirB2
SCNpilot_expt_1000_bf_scaffold_20224_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2151..2837)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCD4_9RHIZ rbh
Transglycosylase {ECO:0000313|EMBL:EYR78171.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
virB1; VirB1 type IV secretion protein VirB rbh
SCNpilot_expt_1000_bf_scaffold_20224_7
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2840..3067)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JLE3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ELT47442.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_20224_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3034..3423)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI00036740BC
Uncharacterized protein {ECO:0000313|EMBL:EYR78170.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_20224_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3519..3875
DNA (357bp) protein (119aa)
Transcriptional regulator protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F1G4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78169.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_20224_10
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4259..4675
DNA (417bp) protein (139aa)
chromosome partitioning protein ParA n=1 Tax=Rhizobium mongolense RepID=UPI0003B7B0B7
Chromosome partitioning protein ParA {ECO:0000313|EMBL:KJF71425.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
repA; putative replication protein A
SCNpilot_expt_1000_bf_scaffold_20224_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4678..5457
DNA (780bp) protein (260aa)
chromosome partitioning protein ParA n=1 Tax=Rhizobium mongolense RepID=UPI0003B7B0B7
Plasmid partitioning protein RepA {ECO:0000313|EMBL:EYR78168.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
repA; putative replication protein A
SCNpilot_expt_1000_bf_scaffold_20224_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5454..6404
DNA (951bp) protein (317aa)
Plasmid partitioning protein RepB n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F5C6_9RHIZ rbh
Plasmid partitioning protein RepB {ECO:0000313|EMBL:EYR78167.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
parB-like partition protein rbh
SCNpilot_expt_1000_bf_scaffold_20224_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6586..7230
DNA (645bp) protein (215aa)
replication initiation protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003642F9A
Replication protein RepC {ECO:0000313|EMBL:EYR78166.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
repC; replication initiation protein RepC
Displaying 13 items

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