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SCNpilot_expt_1000_bf_scaffold_13054

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13054_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..223
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D606_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80931.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13054_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

582..1160
DNA (579bp) protein (193aa)
Transcriptional regulator TonB family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1H1_9RHIZ
Transcriptional regulator TonB family {ECO:0000313|EMBL:EYR80932.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
TonB family protein; K03832 periplasmic protein TonB
SCNpilot_expt_1000_bf_scaffold_13054_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1314..1955
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXZ3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80933.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13054_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1979..2221
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH31_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80934.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13054_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2236..2550
DNA (315bp) protein (105aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X526_OCHA4
TonB family protein {ECO:0000313|EMBL:EYR80935.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
antibiotic biosynthesis monooxygenase; K07145
SCNpilot_expt_1000_bf_scaffold_13054_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2912..3277)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVG6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80937.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13054_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3283..3699)
DNA (417bp) protein (139aa)
Putative globin-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D010_9RHIZ
Putative globin-like protein {ECO:0000313|EMBL:EYR80938.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative globin-like protein; K06886 hemoglobin
SCNpilot_expt_1000_bf_scaffold_13054_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3829..4389
DNA (561bp) protein (187aa)
Putative transcriptional regulator, TetR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQZ3_9RHIZ rbh
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:EYR80939.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_13054_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4428..4769
DNA (342bp) protein (114aa)
multidrug transporter n=1 Tax=Rhizobium giardinii RepID=UPI00037D8D5F
Membrane transporters of cation and cationic drug {ECO:0000313|EMBL:EYR80940.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
qacE; quaternary ammonium compound-resistance protein QacE
SCNpilot_expt_1000_bf_scaffold_13054_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4878..5663
DNA (786bp) protein (262aa)
Uncharacterized protein n=4 Tax=Rhizobium meliloti RepID=F6C130_SINMB rbh
Trehalose utilization protein {ECO:0000313|EMBL:EYR80941.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thuA; ThuA trehalose catabolism protein rbh
SCNpilot_expt_1000_bf_scaffold_13054_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5671..6690
DNA (1020bp) protein (340aa)
Putative dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCI9_9RHIZ rbh
Putative dehydrogenase {ECO:0000313|EMBL:EYR80942.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxidoreductase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_13054_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6692..7711)
DNA (1020bp) protein (340aa)
HTH-type transcriptional regulator AglR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BX36_9RHIZ rbh
Transcriptional regulator LacI family {ECO:0000313|EMBL:EYR80943.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thuR; Transcriptional repressor,likely regulates trehalose transport and catabolism
SCNpilot_expt_1000_bf_scaffold_13054_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8023..8529
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZE8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80944.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_13054_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8550..8906
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZE8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80944.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying 14 items

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