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SCNpilot_expt_1000_bf_scaffold_13097

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13097_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..927)
DNA (927bp) protein (309aa)
Formate dehydrogenase, alpha subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXR6_9RHIZ
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EYR79615.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
formate dehydrogenase, alpha subunit
SCNpilot_expt_1000_bf_scaffold_13097_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(888..1469)
DNA (582bp) protein (194aa)
Formate dehydrogenase, alpha subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXR6_9RHIZ
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EYR79615.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
formate dehydrogenase, alpha subunit
SCNpilot_expt_1000_bf_scaffold_13097_3
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1474..3030)
DNA (1557bp) protein (519aa)
Putative formate dehydrogenase beta subunit {ECO:0000313|EMBL:CCF21193.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CCF21193.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
fdsB; NAD-dependent formate dehydrogenase subunit beta (EC:1.2.1.2) rbh
Putative formate dehydrogenase beta subunit n=1 Tax=Rhizobium sp. RepID=L0NJD5_RHISP rbh
SCNpilot_expt_1000_bf_scaffold_13097_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3027..3446)
DNA (420bp) protein (140aa)
Formate dehydrogenase protein, gamma subunit {ECO:0000313|EMBL:EYR79618.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EYR79618.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fdsG; formate dehydrogenase subunit gamma (EC:1.2.1.2); K00127 formate dehydrogenase, gamma subunit
Formate dehydrogenase protein, gamma subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ64_9RHIZ
SCNpilot_expt_1000_bf_scaffold_13097_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3632..4576)
DNA (945bp) protein (315aa)
Hydrogen peroxide-inducible activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ91_9RHIZ rbh
Hydrogen peroxide-inducible activator {ECO:0000313|EMBL:EYR79619.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR-type transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_13097_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4628..5578
DNA (951bp) protein (317aa)
Acrylyl-CoA reductase AcuI {ECO:0000313|EMBL:EYR79620.1}; EC=1.3.1.84 {ECO:0000313|EMBL:EYR79620.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Acrylyl-CoA reductase AcuI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUP2_9RHIZ rbh
zinc-binding dehydrogenase family oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_13097_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5621..6391)
DNA (771bp) protein (257aa)
short-chain type dehydrogenase/reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
Short-chain dehydrogenase/reductase SDR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES75_9RHIZ rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EYR79621.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_13097_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6528..7259
DNA (732bp) protein (244aa)
DeoR faimly transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00036129C5
Glycerol-3-phosphate regulon repressor {ECO:0000313|EMBL:EYR79622.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glpR; glycerol-3-phosphate regulon repressor
SCNpilot_expt_1000_bf_scaffold_13097_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7373..8893
DNA (1521bp) protein (507aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glpD; protein GlpD; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] rbh
Glycerol-3-phosphate dehydrogenase GlpD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EY53_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_13097_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8935..10017
DNA (1083bp) protein (361aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000313|EMBL:EYR79624.1}; EC=3.6.3.20 {ECO:0000313|EMBL:EYR79624.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sn-glycerol-3-phosphate import ATP-binding protein UgpC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHD2_9RHIZ rbh
putative ATP-binding protein of sugar ABC transporter; K02023 multiple sugar transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_13097_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10028..11098
DNA (1071bp) protein (357aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC 2 {ECO:0000313|EMBL:EYR79625.1}; EC=3.6.3.20 {ECO:0000313|EMBL:EYR79625.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sn-glycerol-3-phosphate import ATP-binding protein UgpC 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXE5_9RHIZ rbh
ABC transporter; K02023 multiple sugar transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_13097_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11101..11964
DNA (864bp) protein (288aa)
Putative permease component of ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6B3_9RHIZ rbh
Putative permease component of ABC transporter {ECO:0000313|EMBL:EYR79626.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar transport system, permease; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_13097_13
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12645..12857
DNA (213bp) protein (71aa)
Trehalose transport system permease protein SugB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1R8_9RHIZ
Sugar ABC transporter permease {ECO:0000313|EMBL:KEQ04128.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
ABC transporter; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_13097_14
unknown

Not on your lists

comp(12933..13049)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13097_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13353..13688
DNA (336bp) protein (112aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Rhizobium sp. CF142 RepID=J1TI63_9RHIZ
Putative glycerol-3-phosphate and glycerol ABC transporter,periplasmic solute-binding component {ECO:0000313|EMBL:EYR79629.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
Displaying 15 items

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